RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 RNF11Q9Y3C5 154 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 CXorf49A8MYA2 514 aaPredicted RBP15.23■□□□□ 0.03
VPS29-204ENST00000548259 SEC14L5O43304 696 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 SOX30O94993 753 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 CBX7O95931 251 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 HK1P19367 917 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 SSTR1P30872 391 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 CTBP2P56545 445 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 KRTAP1-1Q07627 177 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 MGAT2Q10469 447 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 PON3Q15166 354 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 GOLGA7Q7Z5G4 137 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 FNDC9Q8TBE3 224 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 PLPPR2Q96GM1 343 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 TACO1Q9BSH4 297 aaKnown RBP15.23■□□□□ 0.03
VPS29-204ENST00000548259 NMRK1Q9NWW6 199 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 MED12Q93074 2177 aa15.23■□□□□ 0.03
VPS29-204ENST00000548259 CHD3Q12873 2000 aaKnown RBP15.22■□□□□ 0.03
VPS29-204ENST00000548259 A0A087X1B8 175 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 TCRBV9S1A1TA0A576 114 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 FAM159BA6NKW6 160 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 EIF3HO15372 352 aaKnown RBP eCLIP15.22■□□□□ 0.03
VPS29-204ENST00000548259 KLF4O43474 513 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 CD5LO43866 347 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 F12P00748 615 aaPredicted RBP15.22■□□□□ 0.03
VPS29-204ENST00000548259 FESP07332 822 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 GSTA2P09210 222 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 EMDP50402 254 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 CCNG1P51959 295 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 PNLIPRP2P54317 469 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 C3orf62Q6ZUJ4 267 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 CMC1Q7Z7K0 106 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 GAS2L3Q86XJ1 694 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 WFDC8Q8IUA0 241 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 SAMD14Q8IZD0 417 aaPredicted RBP15.22■□□□□ 0.03
VPS29-204ENST00000548259 SLC35F6Q8N357 371 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 OR6K3Q8NGY3 331 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 AKAP1Q92667 903 aaKnown RBP eCLIP15.22■□□□□ 0.03
VPS29-204ENST00000548259 BTBD9Q96Q07 612 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 MRPL1Q9BYD6 325 aaKnown RBP15.22■□□□□ 0.03
VPS29-204ENST00000548259 OR10A4Q9H209 315 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 SAYSD1Q9NPB0 183 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 NGBQ9NPG2 151 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 CES1P1Q9UKY3 287 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 OR10H1Q9Y4A9 318 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 SNX8Q9Y5X2 465 aa15.22■□□□□ 0.03
VPS29-204ENST00000548259 MTHFD2P13995 350 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 PCSK2P16519 638 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 ALDH9A1P49189 494 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 CLK3P49761 638 aaKnown RBP15.21■□□□□ 0.03
VPS29-204ENST00000548259 B3GALT5-AS1P59052 145 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 DLG1Q12959 904 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 CALCOCO2Q13137 446 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 CAPRIN1Q14444 709 aaKnown RBP15.21■□□□□ 0.03
VPS29-204ENST00000548259 ACAP2Q15057 778 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 TRMT12Q53H54 448 aaKnown RBP15.21■□□□□ 0.03
VPS29-204ENST00000548259 PPP4R4Q6NUP7 873 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 BEND4Q6ZU67 534 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 MED12LQ86YW9 2145 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 METTL4Q8N3J2 472 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 MAPK1IP1LQ8NDC0 245 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 NXNL1Q96CM4 212 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 ZBED6CLQ96FA7 236 aaPredicted RBP15.21■□□□□ 0.03
VPS29-204ENST00000548259 DSN1Q9H410 356 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 ELOVL6Q9H5J4 265 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 NOL11Q9H8H0 719 aaKnown RBP15.21■□□□□ 0.03
VPS29-204ENST00000548259 PLSCR4Q9NRQ2 329 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 PAQR5Q9NXK6 330 aaPredicted RBP15.21■□□□□ 0.03
VPS29-204ENST00000548259 AP4B1Q9Y6B7 739 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 USF3Q68DE3 2245 aa15.21■□□□□ 0.03
VPS29-204ENST00000548259 ROS1P08922 2347 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 A8MV72 311 aaPredicted RBP15.2■□□□□ 0.02
VPS29-204ENST00000548259 H3BML4 177 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 TSPAN2O60636 221 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 ESRRBO95718 433 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 THBDP07204 575 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 CLDN15P56746 228 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 COMMD6Q7Z4G1 85 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 PPM1NQ8N819 430 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 ZNF675Q8TD23 568 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 FBXW5Q969U6 566 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 GMPPAQ96IJ6 420 aaPredicted RBP15.2■□□□□ 0.02
VPS29-204ENST00000548259 TMEM204Q9BSN7 226 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 ACTR6Q9GZN1 396 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 BARX1Q9HBU1 254 aaPredicted RBP15.2■□□□□ 0.02
VPS29-204ENST00000548259 GIMAP4Q9NUV9 329 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 SENP1Q9P0U3 644 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 CPSF2Q9P2I0 782 aaKnown RBP15.2■□□□□ 0.02
VPS29-204ENST00000548259 CDC42EP3Q9UKI2 254 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 SLC12A4Q9UP95 1085 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 GPR52Q9Y2T5 361 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 ZNF337Q9Y3M9 751 aa15.2■□□□□ 0.02
VPS29-204ENST00000548259 CCDC188H7C350 402 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 SCO2O43819 266 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 EVI2BP34910 448 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 TRA2BP62995 288 aaKnown RBP15.19■□□□□ 0.02
VPS29-204ENST00000548259 MRPS35P82673 323 aaKnown RBP15.19■□□□□ 0.02
VPS29-204ENST00000548259 NAB1Q13506 487 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 GUSBP1Q15486 140 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 LTB4RQ15722 352 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms