RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 ECH1Q13011 328 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 TSTQ16762 297 aaKnown RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 HMBOX1Q6NT76 420 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 METTL2BQ6P1Q9 378 aaKnown RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 CDHR3Q6ZTQ4 885 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 FTMTQ8N4E7 242 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 BSCL2Q96G97 398 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 FOXQ1Q9C009 403 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 TIMMDC1Q9NPL8 285 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 CUTCQ9NTM9 273 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ZNF222Q9UK12 451 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 STRCQ7RTU9 1775 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 PDLIM1O00151 329 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 GPR39O43194 453 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 DOK2O60496 412 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ICAM2P13598 275 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 S1PR1P21453 382 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 KDELR2P33947 212 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 HTR6P50406 440 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 E2F1Q01094 437 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 RHDQ02161 417 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 MFSD13AQ14CX5 517 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ODF4Q2M2E3 257 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 WSCD2Q2TBF2 565 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SLC36A3Q495N2 470 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 RBM48Q5RL73 367 aaKnown RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 IDNKQ5T6J7 187 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 FAM111BQ6SJ93 734 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 C19orf35Q6ZS72 473 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 COL22A1Q8NFW1 1626 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ECHDC3Q96DC8 303 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 L3HYPDHQ96EM0 354 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 PHIPQ8WWQ0 1821 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 TFECO14948 347 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SIGLEC6O43699 453 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 EDIL3O43854 480 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ERCC1P07992 297 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ACPPP15309 386 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 GSTT1P30711 240 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 MMP12P39900 470 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 NUDT6P53370 316 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 PRDX1Q06830 199 aaKnown RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SIX1Q15475 284 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ALG10BQ5I7T1 473 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ZNF627Q7L945 461 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 MAMDC2Q7Z304 686 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ZNF227Q86WZ6 799 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ZSWIM9Q86XI8 627 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 CLIP4Q8N3C7 705 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 PACRGLQ8N7B6 248 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 OR2T33Q8NG76 320 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ZNF480Q8WV37 535 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 TNFAIP8L1Q8WVP5 186 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 DDIT4LQ96D03 193 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 HAVCR1Q96D42 359 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ZFP3Q96NJ6 502 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SMIM14Q96QK8 99 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 INSM2Q96T92 566 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 CST11Q9H112 138 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 MTHFD2LQ9H903 347 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 DMRT3Q9NQL9 472 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 PTTG3PQ9NZH4 202 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 CD300AQ9UGN4 299 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 KCND3Q9UK17 655 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 MYO18AQ92614 2054 aaKnown RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SCN7AQ01118 1682 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 METTL21EPA6NDL7 271 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SHISA7A6NL88 538 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ANHXE9PGG2 379 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ZFAND5O76080 213 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ARHGEF15O94989 841 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 H2BFMP0C1H6 154 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 CD46P15529 392 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ABOP16442 354 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ZNF43P17038 809 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 GGT2P36268 569 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SH3BP2P78314 561 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 CLPPQ16740 277 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SLC27A4Q6P1M0 643 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 OPN5Q6U736 354 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 RAB11FIP2Q7L804 512 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 GPALPP1Q8IXQ4 340 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 OR13H1Q8NG92 308 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 PPP1R35Q8TAP8 253 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 NANOS1Q8WY41 292 aaKnown RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ELF4Q99607 663 aaPredicted RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 SLC6A17Q9H1V8 727 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 UBTD1Q9HAC8 227 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 FGF21Q9NSA1 209 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ING3Q9NXR8 418 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 KCMF1Q9P0J7 381 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 EIF3KQ9UBQ5 218 aaKnown RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 MCTS1Q9ULC4 181 aaKnown RBP6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 HS3ST3A1Q9Y663 406 aa6.53□□□□□ -1.36
SRGAP1-206ENST00000543397 ANTXRLA6NF34 631 aa6.52□□□□□ -1.36
SRGAP1-206ENST00000543397 HSBP1L1C9JCN9 74 aa6.52□□□□□ -1.36
SRGAP1-206ENST00000543397 FTCDNL1E5RQL4 147 aa6.52□□□□□ -1.36
SRGAP1-206ENST00000543397 FAAHO00519 579 aa6.52□□□□□ -1.36
SRGAP1-206ENST00000543397 C1orf105O95561 183 aa6.52□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms