RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	NPRL3	Q12980	569 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	QRICH1	Q2TAL8	776 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	CCDC152	Q4G0S7	254 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	CCDC122	Q5T0U0	273 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	NKAIN2	Q5VXU1	208 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	ATRAID	Q6UW56	229 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	CCDC91	Q7Z6B0	441 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	SERPINA12	Q8IW75	414 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	KRT222	Q8N1A0	295 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	OR13F1	Q8NGS4	319 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	ZNF564	Q8TBZ8	553 aa	Predicted RBP	4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	SUN5	Q8TC36	379 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	HIST1H2AC	Q93077	130 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	PTP4A1	Q93096	173 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	DHTKD1	Q96HY7	919 aa	Predicted RBP	4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	MAGEB18	Q96M61	343 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	C2orf40	Q9H1Z8	148 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	SPATA7	Q9P0W8	599 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	NUDC	Q9Y266	331 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	NTNG1	Q9Y2I2	539 aa		4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	RPH3A	Q9Y2J0	694 aa	Predicted RBP	4.15	□□□□□ -1.75
YBX3-210	ENST00000540975	IBTK	Q9P2D0	1353 aa	Predicted RBP	4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	SYNJ1	O43426	1573 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	BICRA	Q9NZM4	1560 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	UQCRHL	A0A096LP55	91 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975		M0QX08	132 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	RTL8C	O15255	209 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	NUDT21	O43809	227 aa	Known RBP	4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	NEMF	O60524	1076 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	KLHL41	O60662	606 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	FMO6P	O60774	539 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	SMC2	O95347	1197 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	SLC2A10	O95528	541 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	ECD	O95905	644 aa	Predicted RBP	4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	SLC4A1	P02730	911 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	APRT	P07741	180 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	UQCRH	P07919	91 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	ALPI	P09923	528 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	CD1E	P15812	388 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	MGMT	P16455	207 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	UGT1A6	P19224	532 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	CD9	P21926	228 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	IGFBP5	P24593	272 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	PTPN4	P29074	926 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	HSPA1L	P34931	641 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	CTNNA1	P35221	906 aa	Known RBP	4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	XCR1	P46094	333 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	NSF	P46459	744 aa	Known RBP	4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	OR1D4	P47884	311 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	CLPP	Q16740	277 aa	Predicted RBP	4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	ZNF544	Q6NX49	715 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	CCDC80	Q76M96	950 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	TMEM110	Q86TL2	294 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	SLC22A16	Q86VW1	577 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	EFCAB13	Q8IY85	973 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	PEX5L	Q8IYB4	626 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	SH3GL1	Q99961	368 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	CAPS2	Q9BXY5	557 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	ASB8	Q9H765	288 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	NARF	Q9UHQ1	456 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	CTNNA3	Q9UI47	895 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	ABCG2	Q9UNQ0	655 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	MTF2	Q9Y483	593 aa	Predicted RBP	4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	POLR1A	O95602	1720 aa	Predicted RBP	4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	NINL	Q9Y2I6	1382 aa		4.14	□□□□□ -1.75
YBX3-210	ENST00000540975	KIAA1107	Q9UPP5	1409 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	CTTNBP2	Q8WZ74	1663 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	CFTR	P13569	1480 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	IGKV6D-21	A0A0A0MT36	114 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	CASQ2	O14958	399 aa	Predicted RBP	4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	LCMT2	O60294	686 aa	Known RBP	4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	CT45A10	P0DMU9	189 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	KRT13	P13646	458 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	DES	P17661	470 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	ELK1	P19419	428 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	IL2RG	P31785	369 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	CA8	P35219	290 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	RWDD2B	P57060	319 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	PDIA5	Q14554	519 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	ZIC1	Q15915	447 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	ZNF658	Q5TYW1	1059 aa	Predicted RBP	4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	HHAT	Q5VTY9	493 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	SLC7A5P1	Q8MH63	180 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	CEND1	Q8N111	149 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	PYROXD2	Q8N2H3	581 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	LRRC43	Q8N309	656 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	LINC01006	Q8NI28	216 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	CCDC26	Q8TAB7	109 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	TSGA13	Q96PP4	275 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	FAM213A	Q9BRX8	229 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	PIGV	Q9NUD9	493 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	UBAP1	Q9NZ09	502 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	AIPL1	Q9NZN9	384 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	DPM3	Q9P2X0	92 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	KLHL21	Q9UJP4	597 aa		4.13	□□□□□ -1.75
YBX3-210	ENST00000540975	ARHGAP31	Q2M1Z3	1444 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975	SETD5	Q9C0A6	1442 aa		4.12	□□□□□ -1.75
YBX3-210	ENST00000540975		A0A1W2PRV1	198 aa		4.12	□□□□□ -1.75

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