RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ARHGAP21Q5T5U3 1957 aa11.52□□□□□ -0.57
CLSTN3-208ENST00000538933 CCT8L1PA6NM43 557 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 A6NNC1 897 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 FAM171A2A8MVW0 826 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 ANKRD28O15084 1053 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 HS6ST1O60243 411 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 ANP32DO95626 131 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 PGRP06401 933 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 C8BP07358 591 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 CYC1P08574 325 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 COX4I1P13073 169 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 PRDX6P30041 224 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 RFC3P40938 356 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 KIR2DL3P43628 341 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 C21orf58P58505 322 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 C6orf10Q5SRN2 563 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 ANXA8L1Q5VT79 327 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 OR4F3Q6IEY1 312 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 CIARTQ8N365 385 aaPredicted RBP11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 POU5F2Q8N7G0 328 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 POGLUT1Q8NBL1 392 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 GOT1L1Q8NHS2 421 aaPredicted RBP11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 METTL21AQ8WXB1 218 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 TEX37Q96LM6 180 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 OR52E6Q96RD3 313 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 BHLHE41Q9C0J9 482 aaPredicted RBP11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 CDCP1Q9H5V8 836 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 SLC35C2Q9NQQ7 365 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 PRDM9Q9NQV7 894 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 TAGLN3Q9UI15 199 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 LEF1Q9UJU2 399 aaPredicted RBP11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 NDUFAF1Q9Y375 327 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 MMACHCQ9Y4U1 282 aa11.51□□□□□ -0.57
CLSTN3-208ENST00000538933 EML6Q6ZMW3 1958 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 A0A0G2JNJ9 132 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 BBIP1A8MTZ0 92 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 CYR61O00622 381 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 PGRMC2O15173 223 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 OR10H2O60403 315 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 TBX19O60806 448 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 LDB3O75112 727 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 CPSF4O95639 269 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 GLI4P10075 376 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 LAMP1P11279 417 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 CSNK2A2P19784 350 aaPredicted RBP11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 IL12AP29459 219 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 GPC1P35052 558 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 FEN1P39748 380 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 MNAT1P51948 309 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 MANFP55145 182 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 HSD17B7P56937 341 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 PLIN5Q00G26 463 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 ID2Q02363 134 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 LRRC74AQ0VAA2 488 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 PDE7AQ13946 482 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 RCAN2Q14206 197 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 EXT1Q16394 746 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 VPS26BQ4G0F5 336 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 FAM91A1Q658Y4 838 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 ARHGAP11AQ6P4F7 1023 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 BLOC1S3Q6QNY0 202 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 CCDC121Q6ZUS5 278 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 SULF2Q8IWU5 870 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 OR4N5Q8IXE1 308 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 RIMKLAQ8IXN7 391 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 SLC5A8Q8N695 610 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 PCYOX1LQ8NBM8 494 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 C7orf57Q8NEG2 295 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 OR52N2Q8NGI0 321 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 TSPEARQ8WU66 669 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 VPS33AQ96AX1 596 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 ZBED6CLQ96FA7 236 aaPredicted RBP11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 NSL1Q96IY1 281 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 COX4I2Q96KJ9 171 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 PTCHD1Q96NR3 888 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 TTYH2Q9BSA4 534 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 PLEKHF2Q9H8W4 249 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 FAM120CQ9NX05 1096 aaKnown RBP11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 Q9UFV3 132 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 CBLCQ9ULV8 474 aa11.5□□□□□ -0.57
CLSTN3-208ENST00000538933 CHD3Q12873 2000 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 A0A1W2PP18 115 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 A0A1W2PRB8 838 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 AIM2O14862 343 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 TFECO14948 347 aaPredicted RBP11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 DYRK3O43781 588 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 CDC40O60508 579 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 CTNSO60931 367 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 PDE9AO76083 593 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 GPR75O95800 540 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 IFNA16P05015 189 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 ABCB1P08183 1280 aaPredicted RBP11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 TNNI3P19429 210 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 EFNA1P20827 205 aaPredicted RBP11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 MPIP34949 423 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 TRHRP34981 398 aaPredicted RBP11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 ADH7P40394 386 aa11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 ZFP36L2P47974 494 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-208ENST00000538933 XKP51811 444 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms