RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 NODALQ96S42 347 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 NT5DC2Q9H857 520 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 CLEC4AQ9UMR7 237 aa8.15□□□□□ -1.11
USP28-205ENST00000537706 MED12LQ86YW9 2145 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 C1GALT1C1LP0DN25 315 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 HK1P19367 917 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 EPHA1P21709 976 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 GRIA1P42261 906 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 FNTAP49354 379 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 CDH15P55291 814 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 IL13RA1P78552 427 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 SLBPQ14493 270 aaKnown RBP eCLIP8.14□□□□□ -1.11
USP28-205ENST00000537706 STK11Q15831 433 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 ADPRMQ3LIE5 342 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 NEPROQ6NW34 567 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 BHLHA15Q7RTS1 189 aaPredicted RBP8.14□□□□□ -1.11
USP28-205ENST00000537706 ADCY4Q8NFM4 1077 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 DOK4Q8TEW6 326 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 HGDQ93099 445 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 NDNQ99608 321 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 BPESC1Q9GZL8 116 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 SLITRK2Q9H156 845 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 C12orf49Q9H741 205 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 FOLH1BQ9HBA9 442 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 PHF11Q9UIL8 331 aa8.14□□□□□ -1.11
USP28-205ENST00000537706 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 CCT8L1PA6NM43 557 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 B4DSR2 109 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 E7EQL1 145 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 H3BML4 177 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 AQP8O94778 261 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ENO2P09104 434 aaPredicted RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 FAM153BP0C7A2 387 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 GNAZP19086 355 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 TPSB2P20231 275 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 CNTFP26441 200 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 STIP1P31948 543 aaKnown RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 PTGDSP41222 190 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 BUD31P41223 144 aaPredicted RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 TPSAB1Q15661 275 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 FAM153CQ494X1 144 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 TMEM201Q5SNT2 666 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ZNF549Q6P9A3 640 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 DGAT2L6Q6ZPD8 337 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 Q6ZSR9 355 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 OR2W6PQ8NHA6 318 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 EEF1AKMT1Q8WVE0 214 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 OMA1Q96E52 524 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 CAPS2Q9BXY5 557 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 MMP27Q9H306 513 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 WDR41Q9HAD4 459 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 FBXL2Q9UKC9 423 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 PCDHB14Q9Y5E9 798 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 AP4B1Q9Y6B7 739 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 FREM3P0C091 2139 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 MALRD1Q5VYJ5 2156 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 YLPM1P49750 1951 aaKnown RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 LRP5LA4QPB2 252 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ACOX3O15254 700 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 PIN1P1O15428 100 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ZIC3O60481 467 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 GUCA1CO95843 209 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 APRTP07741 180 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 PABPC4LP0CB38 370 aaKnown RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 PTAFRP25105 342 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ATP5A1P25705 553 aaKnown RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 SSR2P43308 183 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 EIF1AXP47813 144 aaKnown RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 SUCLG1P53597 346 aaKnown RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 GDF10P55107 478 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 HMGCS1Q01581 520 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 GANABQ14697 944 aaKnown RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 TRADDQ15628 312 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 PDSS1Q5T2R2 415 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ZNF470Q6ECI4 717 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 AADACL2Q6P093 401 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 THSD4Q6ZMP0 1018 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 CENPUQ71F23 418 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 GALNT12Q8IXK2 581 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 BPIFB2Q8N4F0 458 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 SPATA6LQ8N4H0 392 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ACOT4Q8N9L9 421 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 OR7G1Q8NGA0 311 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 MAIP1Q8WWC4 291 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ERP44Q9BS26 406 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 KIFC1Q9BW19 673 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 OR10A5Q9H207 317 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 CDC42EP4Q9H3Q1 356 aaKnown RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 PRDM7Q9NQW5 492 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 RAB6BQ9NRW1 208 aa8.13□□□□□ -1.11
USP28-205ENST00000537706 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.13□□□□□ -1.11
USP28-205ENST00000537706 GCM2O75603 506 aaPredicted RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 LY6HO94772 140 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 GPR75O95800 540 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 ERCC1P07992 297 aaPredicted RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 SSTR4P31391 388 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 KRT20P35900 424 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 UBA52P62987 128 aaKnown RBP8.12□□□□□ -1.11
USP28-205ENST00000537706 CRADDP78560 199 aa8.12□□□□□ -1.11
USP28-205ENST00000537706 ITGADQ13349 1161 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms