RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	NBEAL1	Q6ZS30	2694 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	ARID1A	O14497	2285 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079		A0A1W2PR48	441 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	FRG2C	A6NGY1	282 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	WISP3	O95389	354 aa	Predicted RBP	11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	AIFM1	O95831	613 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	FAM107A	O95990	144 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	CGA	P01215	116 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	FAM58BP	P0C7Q3	252 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	CREB1	P16220	341 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	KRT4	P19013	534 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	PTX3	P26022	381 aa	Predicted RBP	11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	PIK3R1	P27986	724 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	IDUA	P35475	653 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	GP5	P40197	560 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	KIR2DL2	P43627	348 aa	Predicted RBP	11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	POU4F1	Q01851	419 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	OCRL	Q01968	901 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	CUL3	Q13618	768 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	PLXDC2	Q6UX71	529 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	NUDT13	Q86X67	352 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	HUS1B	Q8NHY5	278 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	DOK4	Q8TEW6	326 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	CKAP2	Q8WWK9	683 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	ESAM	Q96AP7	390 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	REPS1	Q96D71	796 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	TMCO6	Q96DC7	493 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	OMA1	Q96E52	524 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	TSPAN17	Q96FV3	270 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF317	Q96PQ6	595 aa	Predicted RBP	11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	NODAL	Q96S42	347 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	TMEM204	Q9BSN7	226 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	MCMBP	Q9BTE3	642 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF717	Q9BY31	904 aa	Predicted RBP	11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	AMBRA1	Q9C0C7	1298 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	RNF122	Q9H9V4	155 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	KCNK9	Q9NPC2	374 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	FANCF	Q9NPI8	374 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	DKKL1	Q9UK85	242 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	CDC42EP3	Q9UKI2	254 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF175	Q9Y473	711 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	PCDHGA11	Q9Y5H2	935 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	WIF1	Q9Y5W5	379 aa		11.22	□□□□□ -0.61
CAPN1-223	ENST00000533079	FREM3	P0C091	2139 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	DSCAM	O60469	2012 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079		A0A1W2PPM1	405 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	GLOD5	A6NK44	160 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079		A8MV72	311 aa	Predicted RBP	11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079		K7EPI3	171 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	SH3BGRL	O75368	114 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	CT62	P0C5K7	136 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	FCGR2A	P12318	317 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	PEPD	P12955	493 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	TBXA2R	P21731	343 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	SPR	P35270	261 aa	Predicted RBP	11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	PSPH	P78330	225 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	HMGCS1	Q01581	520 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	DDX39B	Q13838	428 aa	Known RBP	11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	FBXO48	Q5FWF7	155 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	RDH11	Q8TC12	318 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	UBTD2	Q8WUN7	234 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	LCOR	Q96JN0	433 aa	Predicted RBP	11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	MAGEB18	Q96M61	343 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	CCT8L2	Q96SF2	557 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	OR10A4	Q9H209	315 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	VPS11	Q9H270	941 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	NUDT4	Q9NZJ9	180 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	OPTC	Q9UBM4	332 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	PROCR	Q9UNN8	238 aa		11.21	□□□□□ -0.61
CAPN1-223	ENST00000533079	NIN	Q8N4C6	2090 aa		11.21	□□□□□ -0.62
CAPN1-223	ENST00000533079		A0A087X1B8	175 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	HMX2	A2RU54	273 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	OR6C70	A6NIJ9	312 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	TRIM49D1	C9J1S8	452 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	LINC01387	J3KSC0	135 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	OVOL3	O00110	214 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	HAX1	O00165	279 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	KLF4	O43474	513 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	TMPRSS11D	O60235	418 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	UGDH	O60701	494 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	UGT2B11	O75310	529 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	TNFRSF21	O75509	655 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	CCDC166	P0CW27	439 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	CD1D	P15813	335 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	CRHR1	P34998	444 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	BSG	P35613	385 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	MAGEA12	P43365	314 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	CCT5	P48643	541 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	STAR	P49675	285 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	SIRPA	P78324	504 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	GUSBP1	Q15486	140 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	OR4D1	Q15615	310 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	ADAM5	Q6NVV9	412 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	LCA5	Q86VQ0	697 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	MAPK1IP1L	Q8NDC0	245 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	OR4K14	Q8NGD5	310 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	BCAS4	Q8TDM0	211 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	CHMP6	Q96FZ7	201 aa		11.2	□□□□□ -0.62
CAPN1-223	ENST00000533079	APOPT1	Q96IL0	206 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms