RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	TMEM41A	Q96HV5	264 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	RILP	Q96NA2	401 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	WDR55	Q9H6Y2	383 aa	Predicted RBP	13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	C3orf14	Q9HBI5	128 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560		Q9N2J8	555 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZFP64	Q9NPA5	681 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLC5A6	Q9Y289	635 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZNF835	Q9Y2P0	537 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	OR10H1	Q9Y4A9	318 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	USH1C	Q9Y6N9	552 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	GOLGA8Q	A0A0J9YX86	632 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	GOLGA8O	A6NCC3	632 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	CCT8L1P	A6NM43	557 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	GOLGA8N	F8WBI6	632 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	RNASET2	O00584	256 aa	Known RBP	13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	REM1	O75628	298 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	AGFG2	O95081	481 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	C6orf47	O95873	294 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	MAP3K8	P41279	467 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	MAGEA5	P43359	124 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	PNLIPRP2	P54317	469 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	MRPS22	P82650	360 aa	Known RBP	13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	SNTA1	Q13424	505 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	PGS1	Q32NB8	556 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	VPS26B	Q4G0F5	336 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLC9B1	Q4ZJI4	515 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	EXOSC6	Q5RKV6	272 aa	Known RBP	13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	DESI1	Q6ICB0	168 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	MFSD12	Q6NUT3	480 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLC30A6	Q6NXT4	461 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZCCHC12	Q6PEW1	402 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	SZRD1	Q7Z422	152 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	PACS2	Q86VP3	889 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	CDRT4	Q8N9R6	151 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	NUP43	Q8NFH3	380 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	OR4N2	Q8NGD1	307 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	SFXN5	Q8TD22	340 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	RNF138	Q8WVD3	245 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	CKAP2	Q8WWK9	683 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	TMCO6	Q96DC7	493 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	NODAL	Q96S42	347 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	OSBPL11	Q9BXB4	747 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	METTL7A	Q9H8H3	244 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLCO1B3	Q9NPD5	702 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	EQTN	Q9NQ60	294 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZCCHC3	Q9NUD5	404 aa	Known RBP	13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	QPCTL	Q9NXS2	382 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	B4GALT7	Q9UBV7	327 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	ERRFI1	Q9UJM3	462 aa	Predicted RBP	13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560	CBLC	Q9ULV8	474 aa		13.78	□□□□□ -0.2
CPSF1-208	ENST00000532560		A0A1B0GUH1	482 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	PRAMEF25	A6NGN4	478 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560		E9PBE3	544 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	CDC40	O60508	579 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	DNAJC8	O75937	253 aa	Predicted RBP	13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	NKX2-2	O95096	273 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	TGDS	O95455	350 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	IGHG3	P01860	377 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	VIM	P08670	466 aa	Known RBP	13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	IDO1	P14902	403 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	PTGDS	P41222	190 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	CA7	P43166	264 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	KIR3DL1	P43629	444 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	WNT3	P56703	355 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	HSF1	Q00613	529 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	GAB1	Q13480	694 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	DECR1	Q16698	335 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	FNDC7	Q5VTL7	733 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	TMEM198	Q66K66	360 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	NXN	Q6DKJ4	435 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	OR4F3	Q6IEY1	312 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	ARHGAP11A	Q6P4F7	1023 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	PAOX	Q6QHF9	649 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	WDR53	Q7Z5U6	358 aa	Predicted RBP	13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	FGD2	Q7Z6J4	655 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	SPPL2C	Q8IUH8	684 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	OR56A1	Q8NGH5	318 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	SSC4D	Q8WTU2	575 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	RELT	Q969Z4	430 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	EFHD2	Q96C19	240 aa	Predicted RBP	13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	MAGEB18	Q96M61	343 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	ADO	Q96SZ5	270 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	CXorf36	Q9H7Y0	433 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	KLRF1	Q9NZS2	232 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	MRTO4	Q9UKD2	239 aa	Known RBP	13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	SNX8	Q9Y5X2	465 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	GPR45	Q9Y5Y3	372 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	CAPN7	Q9Y6W3	813 aa		13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	USP9X	Q93008	2570 aa	Predicted RBP	13.77	□□□□□ -0.21
CPSF1-208	ENST00000532560	DIAPH2	O60879	1101 aa		13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	IL33	O95760	270 aa		13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	LDLR	P01130	860 aa		13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	RFPL3S	P0C7P2	107 aa		13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	ABO	P16442	354 aa		13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	ELAVL4	P26378	380 aa	Known RBP	13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	GABRA3	P34903	492 aa		13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	MASP1	P48740	699 aa		13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	CCT3	P49368	545 aa	Known RBP	13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	PRIM2	P49643	509 aa		13.76	□□□□□ -0.21
CPSF1-208	ENST00000532560	PRKAG1	P54619	331 aa		13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms