RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 OR2L13Q8N349 312 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 NUP43Q8NFH3 380 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 OR7G1Q8NGA0 311 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 OR14A16Q8NHC5 309 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 MIPOL1Q8TD10 442 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CT55Q8WUE5 264 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 UBE2FQ969M7 185 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 NEURL3Q96EH8 262 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CDRT15Q96T59 188 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 ECSITQ9BQ95 431 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CRB3Q9BUF7 120 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 THUMPD3Q9BV44 507 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 RAD21L1Q9H4I0 556 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 CXorf36Q9H7Y0 433 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 IL1RL2Q9HB29 575 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 ZFP64Q9NPA5 681 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 SPAG4Q9NPE6 437 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 PNO1Q9NRX1 252 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 SLC6A13Q9NSD5 602 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 THUMPD1Q9NXG2 353 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 GIN1Q9NXP7 522 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 MAT2BQ9NZL9 334 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 PRPF19Q9UMS4 504 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 CFL2Q9Y281 166 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 PTRH2Q9Y3E5 179 aaKnown RBP6.88□□□□□ -1.31
CD44-228ENST00000528455 PCDHGB3Q9Y5G1 929 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 PTPRQQ9UMZ3 2332 aa6.88□□□□□ -1.31
CD44-228ENST00000528455 KALRNO60229 2985 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ATRXP46100 2492 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 LOC101059948A0A1B0GTJ6 334 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 A0A1W2PS29 197 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 OR6C76A6NM76 312 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 C17orf105B2RV13 164 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 FXYD1O00168 92 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 AGR2O95994 175 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 WNT11O96014 354 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 IGKV3-11P04433 115 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 UMODP07911 640 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 CD8BP10966 210 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 LIPCP11150 499 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 EFNA1P20827 205 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 MATN1P21941 496 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 CHI3L1P36222 383 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 DLSTP36957 453 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 MAP3K8P41279 467 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 CDK9P50750 372 aaKnown RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 GPR143P51810 404 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 EFNA3P52797 238 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 EEFSECP57772 596 aaKnown RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 HSPB3Q12988 150 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 FADDQ13158 208 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 DNASE1L3Q13609 305 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 TP53BP2Q13625 1128 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ZNF267Q14586 743 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 MYBPC3Q14896 1274 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 RGNQ15493 299 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SPDYE7PQ495Y7 208 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SOWAHCQ53LP3 525 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 SFT2D3Q587I9 215 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SAMD4BQ5PRF9 694 aaKnown RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 C6orf163Q5TEZ5 329 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 PGM2L1Q6PCE3 622 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 VHLLQ6RSH7 139 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 FAM111BQ6SJ93 734 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 DGAT2L6Q6ZPD8 337 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SHISA6Q6ZSJ9 500 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 NDUFAF7Q7L592 441 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SERPINA11Q86U17 422 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 TSPYL5Q86VY4 417 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 MSRB3Q8IXL7 192 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 PRSS58Q8IYP2 241 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 DEFB107AQ8IZN7 70 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 METTL25Q8N6Q8 603 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ZNF615Q8N8J6 731 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ENDOVQ8N8Q3 282 aaKnown RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 LSM14AQ8ND56 463 aaKnown RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 NFAM1Q8NET5 270 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 B3GNT7Q8NFL0 401 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ADCY4Q8NFM4 1077 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 OR7G2Q8NG99 324 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 OR56A1Q8NGH5 318 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 OR52N2Q8NGI0 321 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 OR1N1Q8NGS0 311 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 OR9A2Q8NGT5 310 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 OR8K3Q8NH51 312 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 M1APQ8TC57 530 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 HOXB13Q92826 284 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 KAT2AQ92830 837 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 PMM1Q92871 262 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 TMEM125Q96AQ2 219 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 KIAA1143Q96AT1 154 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 FAM120BQ96EK7 910 aaKnown RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 FBXL20Q96IG2 436 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 IMMP1LQ96LU5 166 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ZNF583Q96ND8 569 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 LPAR4Q99677 370 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SLC35A5Q9BS91 424 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SPATA9Q9BWV2 254 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SEMA4CQ9C0C4 833 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ZNF700Q9H0M5 742 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms