RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 HSF4Q9ULV5 492 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 TMEM5Q9Y2B1 443 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 COLEC10Q9Y6Z7 277 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 NCKAP5O14513 1909 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 PRRC2CQ9Y520 2896 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 ACACAQ13085 2346 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 A0A0G2JN53 185 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 A0A1B0GVT2 93 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ARHGAP10A1A4S6 786 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 GSAPA4D1B5 854 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PSMD9O00233 223 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 BTN3A3O00478 584 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MRASO14807 208 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 HAT1O14929 419 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ANKRD28O15084 1053 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ANGPT2O15123 496 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 BCAT2O15382 392 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 LAMTOR5O43504 91 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 RGS10O43665 173 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 OR1F1O43749 312 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PRICKLE3O43900 615 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 LCMT2O60294 686 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 PTP4A3O75365 173 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 SLC22A3O75751 556 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PGM3O95394 542 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 GBAP04062 536 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 TDGF1P13385 188 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 UGT2B7P16662 529 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 SDC1P18827 310 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 EFNA1P20827 205 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 PRPH2P23942 346 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 NDUFS1P28331 727 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 AVPR2P30518 371 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 SHMT2P34897 504 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MSX2P35548 267 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 DPP6P42658 865 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MAGEA9P43362 315 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MRPL19P49406 292 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 ERFP50548 548 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 BLKP51451 505 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 POLR2JP52435 117 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 KCNK10P57789 538 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 LOXL3P58215 753 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 NXPH1P58417 271 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PSME3P61289 254 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PPP1CAP62136 330 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 UBE2IP63279 158 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 CSNK1G2P78368 415 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 RAE1P78406 368 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 PHEXP78562 749 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ACY1Q03154 408 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PRDX1Q06830 199 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 ACSM2AQ08AH3 577 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 TBL3Q12788 808 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 CSTF3Q12996 717 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 CBX3Q13185 183 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MAD2L1Q13257 205 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 RIN1Q13671 783 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 COTL1Q14019 142 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 RCAN2Q14206 197 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 E2F2Q14209 437 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 CAPRIN1Q14444 709 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 KIAA0040Q15053 153 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 MAPRE2Q15555 327 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 HIST2H2ACQ16777 129 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 DEFB133Q30KQ1 61 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 DNAL1Q4LDG9 190 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 TIGD2Q4W5G0 525 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PAGE2BQ5JRK9 111 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 CEP78Q5JTW2 689 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PAGE3Q5JUK9 113 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ACSM2BQ68CK6 577 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 HIST2H2AA3Q6FI13 130 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 NOXRED1Q6NXP6 359 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 RPUSD3Q6P087 351 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 C16orf89Q6UX73 402 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 TMIGD1Q6UXZ0 262 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 RNF165Q6ZSG1 346 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 H1FNTQ75WM6 255 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 IQCHQ86VS3 1027 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 WDR5BQ86VZ2 330 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 AMIGO1Q86WK6 493 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ARMC8Q8IUR7 673 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 LAS2Q8IYD9 372 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ULK2Q8IYT8 1036 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ADGRF3Q8IZF5 1079 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 C1orf52Q8N6N3 182 aaKnown RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 C10orf53Q8N6V4 93 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 RNF148Q8N7C7 305 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 TMEM105Q8N8V8 129 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ZBTB8BQ8NAP8 495 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 ZNF548Q8NEK5 533 aaPredicted RBP3.92□□□□□ -1.78
CD44-226ENST00000527889 ABHD11Q8NFV4 315 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 OR2L3Q8NG85 312 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 OR2A1Q8NGT9 310 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 DNAJB14Q8TBM8 379 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 PROKR1Q8TCW9 393 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 ABHD5Q8WTS1 349 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 DNASE2BQ8WZ79 361 aa3.92□□□□□ -1.78
CD44-226ENST00000527889 CCDC124Q96CT7 223 aaKnown RBP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms