RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 COL26A1Q96A83 441 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ARSGQ96EG1 525 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 CNRIP1Q96F85 164 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 PPP1R16AQ96I34 528 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ATF6BQ99941 703 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 SPATA5L1Q9BVQ7 753 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 SLA2Q9H6Q3 261 aa8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 ZFR2Q9UPR6 939 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-215ENST00000512632 A0A1W2PR48 441 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 IFI30P13284 250 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 CLDN2P57739 230 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 STXBP1P61764 594 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 NOGQ13253 232 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 CD300LDQ6UXZ3 194 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 KIAA0907Q7Z7F0 614 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 NRMQ8IXM6 262 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 SLAIN1Q8ND83 568 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 RIPOR3Q96MK2 946 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 RNF208Q9H0X6 261 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 ISG20L2Q9H9L3 353 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 ACOXLQ9NUZ1 547 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 H2AFY2Q9P0M6 372 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 MOSPD1Q9UJG1 213 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 EXOSC1Q9Y3B2 195 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 A0A0G2JMP0 313 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 A0A0X1KG70 313 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 TRDV1A0A1B0GX56 115 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 A0A1W2PPV9 198 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 PRR23AA6NEV1 266 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 ARHGEF9O43307 516 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 ERP29P30040 261 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 AHRP35869 848 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 FRKP42685 505 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 KHKP50053 298 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 TGM3Q08188 693 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 FAM27D1Q5T7N8 215 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 SMARCD3Q6STE5 483 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 PRR23CQ6ZRP0 262 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 CPOQ8IVL8 374 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 DNAJC5GQ8N7S2 189 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 OR4M2Q8NGB6 313 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 LINC00615Q96LM1 132 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 FCRL4Q96PJ5 515 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 MED18Q9BUE0 208 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 RNF32Q9H0A6 362 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 MED20Q9H944 212 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 EXTL2Q9UBQ6 330 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 GPR34Q9UPC5 381 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 INMT-MINDY4F8WBC2 141 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 SEC14L5O43304 696 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 PIP5K1CO60331 668 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 OR2B3O76000 313 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 PAHP00439 452 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 HLA-DPB1P04440 258 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 CISD3P0C7P0 127 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC35G4P0C7Q5 338 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 CHRNB1P11230 501 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 FUT1P19526 365 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 MC3RP41968 323 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 TSPAN31Q12999 210 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC9A5Q14940 896 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC25A30Q5SVS4 291 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 NATD1Q8N6N6 113 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 OR5K2Q8NHB8 316 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 BBS10Q8TAM1 723 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 GNPDA2Q8TDQ7 276 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 OR8D1Q8WZ84 308 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 C12orf66Q96MD2 445 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 CLEC4AQ9UMR7 237 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 OR1A2Q9Y585 309 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 LRIT2A6NDA9 550 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 C4orf51C9J302 202 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 HCN1O60741 890 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 FGF9P31371 208 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 PPM1AP35813 382 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 RGS8P57771 180 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 REEP5Q00765 189 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 TRAM2Q15035 370 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 LTB4RQ15722 352 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 RNASE12Q5GAN4 147 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC39A5Q6ZMH5 540 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 DGLUCYQ7Z3D6 616 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 LRRTM4Q86VH4 590 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 CXorf40AQ8TE69 158 aa8.68□□□□□ -1.02
LIMCH1-215ENST00000512632 A0A0C4DFX4 3053 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 HEATR5BQ9P2D3 2071 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 IGLON5A6NGN9 336 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 MAN2B1O00754 1011 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 LANCL1O43813 399 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 TBX19O60806 448 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ADH5P11766 374 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 ELK1P19419 428 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 HLA-DMAP28067 261 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 EVI2BP34910 448 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC16A1P53985 500 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 EPHA5P54756 1037 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 KRT33BQ14525 404 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 PEX5LQ8IYB4 626 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 GHDCQ8N2G8 530 aa8.67□□□□□ -1.02
LIMCH1-215ENST00000512632 SLC37A3Q8NCC5 494 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms