RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 MED17Q9NVC6 651 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 MRPS18AQ9NVS2 196 aaKnown RBP11.23□□□□□ -0.61
NUP54-202ENST00000502850 TVP23BQ9NYZ1 205 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 ACTR10Q9NZ32 417 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 KLHL3Q9UH77 587 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 DAPP1Q9UN19 280 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 LSM2Q9Y333 95 aaKnown RBP11.23□□□□□ -0.61
NUP54-202ENST00000502850 PIAS3Q9Y6X2 628 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 C5orf42Q9H799 3197 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 A0A075B6Q4 140 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 KIR2DS5A0A0G2JLQ3 304 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 A0A0G2JNG1 304 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 KIR2DS3K7RE56 304 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 ARHGAP33O14559 1287 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 PRODHO43272 600 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 UPK1BO75841 260 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 UBXN7O94888 489 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 EPPINO95925 133 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 TNFP01375 233 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 TP53P04637 393 aaPredicted RBP11.22□□□□□ -0.61
NUP54-202ENST00000502850 ALPPL2P10696 532 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 MAGP20916 626 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 FPR3P25089 353 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 ETV6P41212 452 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 CHRNEQ04844 493 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 DUSP2Q05923 314 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 RAB40BQ12829 278 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 FOXD4Q12950 439 aaPredicted RBP11.22□□□□□ -0.61
NUP54-202ENST00000502850 KIR2DS5Q14953 304 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 DECR1Q16698 335 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 ARHGAP11BQ3KRB8 267 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 C3orf38Q5JPI3 329 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 TPRG1LQ5T0D9 272 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 FIGLAQ6QHK4 219 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 PLEKHM3Q6ZWE6 761 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 RD3Q7Z3Z2 195 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 RANBP3LQ86VV4 465 aaPredicted RBP11.22□□□□□ -0.61
NUP54-202ENST00000502850 ATCAYQ86WG3 371 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 OR2L13Q8N349 312 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 NANOGP1Q8N7R0 232 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 KCT2Q8NC54 265 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 FLVCR1-AS1Q8TAF5 88 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 TMEM163Q8TC26 289 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 ACOT11Q8WXI4 607 aaPredicted RBP11.22□□□□□ -0.61
NUP54-202ENST00000502850 DIO2Q92813 273 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 BMFQ96LC9 184 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 OPALINQ96PE5 141 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 OR5M11Q96RB7 305 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 RSPO3Q9BXY4 272 aaPredicted RBP11.22□□□□□ -0.61
NUP54-202ENST00000502850 ARMC7Q9H6L4 198 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 ISYNA1Q9NPH2 558 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 STUB1Q9UNE7 303 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 SATB2Q9UPW6 733 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 EXOSC1Q9Y3B2 195 aaKnown RBP11.22□□□□□ -0.61
NUP54-202ENST00000502850 WDR45Q9Y484 360 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 SLC22A7Q9Y694 548 aa11.22□□□□□ -0.61
NUP54-202ENST00000502850 A0A087WV62 115 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 LOC110117498-PIK3R3F6TDL0 507 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 TLX2O43763 284 aaPredicted RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 KIAA0513O60268 411 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 CSO75390 466 aaKnown RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 CPMP14384 443 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 PORP16435 677 aaPredicted RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 ALOX12P18054 663 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 NDUFV2P19404 249 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 FUT4P22083 530 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 NUDT1P36639 197 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 CD97P48960 835 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 SNAPC1Q16533 368 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 ALG11Q2TAA5 492 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 ZNF750Q32MQ0 723 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 MINDY4Q4G0A6 757 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 SYT14P1Q58G82 188 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 SPANXN2Q5MJ10 180 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 COMTD1Q86VU5 262 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 RBM12BQ8IXT5 1001 aaKnown RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 CLDN22Q8N7P3 220 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 GALNT6Q8NCL4 622 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 FLCNQ8NFG4 579 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 SNRNP27Q8WVK2 155 aaKnown RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 JPH3Q8WXH2 748 aaPredicted RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 PIK3R3Q92569 461 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 TSACCQ96A04 125 aaPredicted RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 LRR1Q96L50 414 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 CENPOQ9BU64 300 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 ALOXE3Q9BYJ1 711 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 TMEM168Q9H0V1 697 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 CPNE5Q9HCH3 593 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 FGF20Q9NP95 211 aaPredicted RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 NDUFB11Q9NX14 153 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 NLGN3Q9NZ94 848 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 KCMF1Q9P0J7 381 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 MUTYHQ9UIF7 546 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 FBXL21Q9UKT6 434 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 SSR3Q9UNL2 185 aa11.21□□□□□ -0.61
NUP54-202ENST00000502850 ZNF443Q9Y2A4 671 aaPredicted RBP11.21□□□□□ -0.61
NUP54-202ENST00000502850 FANCMQ8IYD8 2048 aa11.21□□□□□ -0.62
NUP54-202ENST00000502850 A0A087WUU8 490 aa11.2□□□□□ -0.62
NUP54-202ENST00000502850 A0A0J9YY10 115 aa11.2□□□□□ -0.62
NUP54-202ENST00000502850 TMEM129A0AVI4 362 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms