RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CDH17Q12864 832 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 SF3A3Q12874 501 aaKnown RBP eCLIP3.6□□□□□ -1.83
USP54-217ENST00000498213 TNK1Q13470 666 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 MEP1AQ16819 746 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ASTE1Q2TB18 679 aaPredicted RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 SYTL3Q4VX76 610 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 KCTD11Q693B1 232 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 KIAA0930Q6ICG6 404 aaPredicted RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 CNSTQ6PJW8 725 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 TMEM205Q6UW68 189 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 PRSS57Q6UWY2 283 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 MEX3DQ86XN8 651 aaKnown RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 KLBQ86Z14 1044 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ZNF567Q8N184 647 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 LRRC75A-AS1Q8N1F1 130 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 RPRMLQ8N4K4 120 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 IPMKQ8NFU5 416 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 OR4K2Q8NGD2 314 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 FLVCR1-AS1Q8TAF5 88 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 STT3BQ8TCJ2 826 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 SMPDL3AQ92484 453 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 PSMF1Q92530 271 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 RND1Q92730 232 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 RERGQ96A58 199 aaPredicted RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 NTNG2Q96CW9 530 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ZMYND19Q96E35 227 aaPredicted RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 SCMH1Q96GD3 660 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 CDKN2AIPNLQ96HQ2 116 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ZNF479Q96JC4 524 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 SELENOSQ9BQE4 189 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 MYLK2Q9H1R3 596 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 MMP25Q9NPA2 562 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 KRCC1Q9NPI7 259 aaPredicted RBP3.6□□□□□ -1.83
USP54-217ENST00000498213 IRAK4Q9NWZ3 460 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ANAPC5Q9UJX4 755 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 C3orf18Q9UK00 162 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 PSMD13Q9UNM6 376 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 PROCRQ9UNN8 238 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 ICKQ9UPZ9 632 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 COMMD10Q9Y6G5 202 aa3.6□□□□□ -1.83
USP54-217ENST00000498213 VWFP04275 2813 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 LOC105369274A0A096LPK9 316 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 LOC102723532A0A0G2JNH3 316 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 A0A1W2PPR1 153 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 MAGEB16A2A368 324 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 OR2A25A4D2G3 310 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 GAGE12JA6NER3 117 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 URADA6NGE7 173 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 MCIDASD6RGH6 385 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 KLRC4-KLRK1H3BQV0 150 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 CD5LO43866 347 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 SHOX2O60902 331 aaPredicted RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 IPO7O95373 1038 aaKnown RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 NSA2O95478 260 aaKnown RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 STATHP02808 62 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 POLBP06746 335 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 C8orf89P0DMQ9 161 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 COX6A1P12074 109 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 ENO3P13929 434 aaPredicted RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 TCF4P15884 667 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 UGT1A6P19224 532 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 JAK1P23458 1154 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 EEF1DP29692 281 aaKnown RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 CTNNA1P35221 906 aaKnown RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 FDFT1P37268 417 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 EMP2P54851 167 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 TAS2R40P59535 323 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 EEF1A1P68104 462 aaKnown RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 EEF1A2Q05639 463 aaKnown RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 PRDX1Q06830 199 aaKnown RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 KLC1Q07866 573 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 BIKQ13323 160 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 HERC3Q15034 1050 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 SPA17Q15506 151 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 ODF3L2Q3SX64 289 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 TTLL9Q3SXZ7 439 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 ANKRD20A4Q4UJ75 823 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 ENTPD8Q5MY95 495 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 ANKRD20A2Q5SQ80 823 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 WASHC2DQ5SRD0 308 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 ATPAF1Q5TC12 328 aaPredicted RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 ANKRD20A1Q5TYW2 823 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 EEF1A1P5Q5VTE0 462 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 ANKRD20A3Q5VUR7 823 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 LIPNQ5VXI9 398 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 ARHGAP11AQ6P4F7 1023 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 FIGLAQ6QHK4 219 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 SCIMPQ6UWF3 145 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 Q6ZTK2 550 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 SERPINA9Q86WD7 417 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 CCDC25Q86WR0 208 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 DND1Q8IYX4 353 aaKnown RBP3.59□□□□□ -1.83
USP54-217ENST00000498213 SYCE1Q8N0S2 351 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 FAM185AQ8N0U4 392 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 OR4N4Q8N0Y3 316 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 TBC1D19Q8N5T2 526 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 DPP10Q8N608 796 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 PLPP5Q8NEB5 264 aa3.59□□□□□ -1.83
USP54-217ENST00000498213 OR2L3Q8NG85 312 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms