RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	LMTK2	Q8IWU2	1503 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	TMEM94	Q12767	1356 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	UNC13B	O14795	1591 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	CXCL11	O14625	94 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	SRPX2	O60687	465 aa	Predicted RBP	4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	AK1	P00568	194 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	GH1	P01241	217 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	IGHG3	P01860	377 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	KRT6B	P04259	564 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	KRT8	P05787	483 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	ZNF853	P0CG23	659 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	ODC1	P11926	461 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	EZR	P15311	586 aa	Known RBP	4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	AREG	P15514	252 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	GLRA2	P23416	452 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	ACP1	P24666	158 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	ALDH3B1	P43353	468 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	BRCC3	P46736	316 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	KRT6C	P48668	564 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	CRMP1	Q14194	572 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	LRRC23	Q53EV4	343 aa	Predicted RBP	4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	LIPJ	Q5W064	366 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	OLFML2A	Q68BL7	652 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	SASS6	Q6UVJ0	657 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	ZNF410	Q86VK4	478 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	NAXD	Q8IW45	347 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	CDH26	Q8IXH8	852 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	BATF2	Q8N1L9	274 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	CCDC148	Q8NFR7	591 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	OR6C4	Q8NGE1	309 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	OR52M1	Q8NGK5	317 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	CFAP36	Q96G28	342 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	MCCC1	Q96RQ3	725 aa	Predicted RBP	4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	NAP1L3	Q99457	506 aa	Predicted RBP	4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	ZNF559	Q9BR84	538 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	GCOM2	Q9BZD3	368 aa	Predicted RBP	4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	SRD5A3	Q9H8P0	318 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	CRLF2	Q9HC73	371 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	PLEKHA6	Q9Y2H5	1048 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	ZNF256	Q9Y2P7	627 aa	Predicted RBP	4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	STRC	Q7RTU9	1775 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	MYO3A	Q8NEV4	1616 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	A2ML1	A8K2U0	1454 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	NLRP1	Q9C000	1473 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	MYO5B	Q9ULV0	1848 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458		E9PCH4	1651 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	EFCAB6	Q5THR3	1501 aa		4.16	□□□□□ -1.74
SF3B1-212	ENST00000496458	RAB3GAP2	Q9H2M9	1393 aa		4.15	□□□□□ -1.74
SF3B1-212	ENST00000496458	UGGT1	Q9NYU2	1555 aa		4.15	□□□□□ -1.74
SF3B1-212	ENST00000496458	IQGAP3	Q86VI3	1631 aa		4.15	□□□□□ -1.74
SF3B1-212	ENST00000496458	XKRY2	A2RUG3	117 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	C5orf51	A6NDU8	294 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	CFAP73	A6NFT4	308 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	ZNF487	B1APH4	448 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458		F8WDY8	70 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	HAT1	O14929	419 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	GMFG	O60234	142 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	NEMF	O60524	1076 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	DUSP11	O75319	330 aa	Known RBP	4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	CS	O75390	466 aa	Known RBP	4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	RAD51D	O75771	328 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	OR6A2	O95222	327 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	PRAMEF12	O95522	483 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	HOXD10	P28358	340 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	HSPA1L	P34931	641 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	GTF2A1	P52655	376 aa	Predicted RBP	4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	LYZ	P61626	148 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	TRDN	Q13061	729 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	ABRAXAS2	Q15018	415 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	KARS	Q15046	597 aa	Known RBP	4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	PPP1R7	Q15435	360 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	LTB4R	Q15722	352 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	ACKR1	Q16570	336 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	IMMT	Q16891	758 aa	Known RBP	4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	HERC4	Q5GLZ8	1057 aa	Predicted RBP	4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	UTF1	Q5T230	341 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	AGAP6	Q5VW22	663 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	TOM1L2	Q6ZVM7	507 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458		Q8N7P7	452 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	CCDC197	Q8NCU1	140 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	ZNF560	Q96MR9	790 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	CARD6	Q9BX69	1037 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	LRRC2	Q9BYS8	371 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	ECT2	Q9H8V3	914 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	FAM212B	Q9NTI7	297 aa	Predicted RBP	4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	PLEK2	Q9NYT0	353 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	RSPH14	Q9UHP6	348 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458		U3KQV3	271 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	TTC21B	Q7Z4L5	1316 aa		4.15	□□□□□ -1.75
SF3B1-212	ENST00000496458	SYNM	O15061	1565 aa		4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458	RALGAPA1	Q6GYQ0	2036 aa		4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458	PIK3C2B	O00750	1634 aa		4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458	NOS1	P29475	1434 aa		4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458	ZNF142	P52746	1687 aa	Predicted RBP	4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458	RPRD2	Q5VT52	1461 aa	Known RBP	4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458	UQCRHL	A0A096LP55	91 aa		4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458		A0A0A6YYC8	382 aa	Predicted RBP	4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458	C13orf42	A0A1B0GVH6	325 aa		4.14	□□□□□ -1.75
SF3B1-212	ENST00000496458	MAGEB16	A2A368	324 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms