RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 HPGDP15428 266 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 HSD3B2P26439 372 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 SMSP52788 366 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 MVDP53602 400 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 VSX2P58304 361 aaPredicted RBP12.65□□□□□ -0.38
GPC1-209ENST00000495100 SHC2P98077 582 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 DOC2BQ14184 412 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 METTL2BQ6P1Q9 378 aaKnown RBP12.65□□□□□ -0.38
GPC1-209ENST00000495100 TNFRSF10DQ9UBN6 386 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 SPATA2Q9UM82 520 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 GRIP1Q9Y3R0 1128 aa12.65□□□□□ -0.38
GPC1-209ENST00000495100 SAGE2PA6NJ88 616 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 PDX1P52945 283 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 RBBP4Q09028 425 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 COX10Q12887 443 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 MINDY4Q4G0A6 757 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 TRMT12Q53H54 448 aaKnown RBP12.65□□□□□ -0.39
GPC1-209ENST00000495100 ARL14Q8N4G2 192 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 OR6C4Q8NGE1 309 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 OR52L1Q8NGH7 329 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 HERVK_113Q902F9 699 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 GCDHQ92947 438 aaPredicted RBP12.65□□□□□ -0.39
GPC1-209ENST00000495100 PDXPQ96GD0 296 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 ZNF514Q96K75 400 aaPredicted RBP12.65□□□□□ -0.39
GPC1-209ENST00000495100 OPALINQ96PE5 141 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 MS4A8Q9BY19 250 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 TMEM168Q9H0V1 697 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 CDCP1Q9H5V8 836 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 CCDC86Q9H6F5 360 aaKnown RBP12.65□□□□□ -0.39
GPC1-209ENST00000495100 ENOPH1Q9UHY7 261 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 CMAHPQ9Y471 501 aa12.65□□□□□ -0.39
GPC1-209ENST00000495100 A0A087WUU8 490 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 C12orf71A8MTZ7 269 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 IL7P13232 177 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 JUNDP17535 347 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 TGM1P22735 817 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 GABRA3P34903 492 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 GJA4P35212 333 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 SOX2P48431 317 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 BLVRAP53004 296 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 CXCR4P61073 352 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 CSNK1G2P78368 415 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 P2RY14Q15391 338 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 NDUFAF6Q330K2 333 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 PRSS41Q7RTY9 318 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 OR13C5Q8NGS8 318 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 SPRYD4Q8WW59 207 aaPredicted RBP12.64□□□□□ -0.39
GPC1-209ENST00000495100 SLC35B4Q969S0 331 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 CNRIP1Q96F85 164 aaPredicted RBP12.64□□□□□ -0.39
GPC1-209ENST00000495100 AMDHD1Q96NU7 426 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 RAD9AQ99638 391 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 HSPB11Q9Y547 144 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 CHD9Q3L8U1 2897 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 UGDHO60701 494 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 APEHP13798 732 aaKnown RBP12.64□□□□□ -0.39
GPC1-209ENST00000495100 KHKP50053 298 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 ERVK-21P61565 698 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 LRIT3Q3SXY7 679 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 FAAH2Q6GMR7 532 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 CNIH2Q6PI25 160 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 LILRA6Q6PI73 481 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 FBXO15Q8NCQ5 510 aaPredicted RBP12.64□□□□□ -0.39
GPC1-209ENST00000495100 OR4K13Q8NH42 304 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 ZNF354BQ96LW1 612 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 SPRTNQ9H040 489 aaPredicted RBP12.64□□□□□ -0.39
GPC1-209ENST00000495100 HHATLQ9HCP6 504 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 FGF22Q9HCT0 170 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 FBXO34Q9NWN3 711 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 COL4A6Q14031 1691 aa12.64□□□□□ -0.39
GPC1-209ENST00000495100 TP53BP1Q12888 1972 aaPredicted RBP12.64□□□□□ -0.39
GPC1-209ENST00000495100 A0A075B6Q4 140 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 SNTNA6NMZ2 147 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 B4DGG1 531 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 TEX46H3BTG2 121 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 PEX12O00623 359 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 KHNYNO15037 678 aaKnown RBP12.63□□□□□ -0.39
GPC1-209ENST00000495100 ARHGEF9O43307 516 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 CXCL10P02778 98 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 APODP05090 189 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 SLC35G6P0C7Q6 338 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 CASP3P42574 277 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 RPS27P42677 84 aaKnown RBP12.63□□□□□ -0.39
GPC1-209ENST00000495100 MAGEB1P43366 347 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 RAB28P51157 221 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 NUDT18Q6ZVK8 323 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 ZNF367Q7RTV3 350 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 TAF8Q7Z7C8 310 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 CDK20Q8IZL9 346 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 SEMA4GQ9NTN9 838 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 SAGE1Q9NXZ1 904 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 ASIC5Q9NY37 505 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 HCN3Q9P1Z3 774 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 OSGIN1Q9UJX0 560 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 MGAT4BQ9UQ53 548 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 PATJQ8NI35 1801 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 BLOC1S5-TXNDC5H3BN57 136 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 EEF1E1O43324 174 aaKnown RBP12.63□□□□□ -0.39
GPC1-209ENST00000495100 SEMA7AO75326 666 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 CTSEP14091 401 aa12.63□□□□□ -0.39
GPC1-209ENST00000495100 EN2P19622 333 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms