RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 KRT20P35900 424 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 DIO3P55073 304 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 TPD52P55327 224 aaPredicted RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 RAE1P78406 368 aaKnown RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 BTKQ06187 659 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 ZNF155Q12901 538 aaPredicted RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 STX5Q13190 355 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 TSNAXIP1Q2TAA8 658 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 CT45A2Q5DJT8 189 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 SH2D4BQ5SQS7 431 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 C10orf62Q5T681 223 aaPredicted RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 AAGABQ6PD74 315 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 SCIMPQ6UWF3 145 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 CLEC9AQ6UXN8 241 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 TAOK1Q7L7X3 1001 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 CXorf67Q86X51 503 aaPredicted RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 SLC44A2Q8IWA5 706 aaPredicted RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 OR4K17Q8NGC6 315 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 OR5M1Q8NGP8 315 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 CDC26Q8NHZ8 85 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 ZFP3Q96NJ6 502 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 FAM111AQ96PZ2 611 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 BTBD9Q96Q07 612 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 MRPL57Q9BQC6 102 aaKnown RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 OPN3Q9H1Y3 402 aaPredicted RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 MRPL46Q9H2W6 279 aaKnown RBP11.44□□□□□ -0.58
SKA1-205ENST00000494518 PIGMQ9H3S5 423 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 UBTD1Q9HAC8 227 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 BRF2Q9HAW0 419 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 FLRT3Q9NZU0 649 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 VPS29Q9UBQ0 182 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 TRPS1Q9UHF7 1281 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 TESMINQ9Y4I5 508 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 RTTNQ86VV8 2226 aa11.44□□□□□ -0.58
SKA1-205ENST00000494518 RAI1Q7Z5J4 1906 aaPredicted RBP11.43□□□□□ -0.58
SKA1-205ENST00000494518 SONP18583 2426 aaKnown RBP11.43□□□□□ -0.58
SKA1-205ENST00000494518 SEC14L5O43304 696 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 GMFGO60234 142 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 ZIC3O60481 467 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 SUPT7LO94864 414 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 HSD17B3P37058 310 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 SERPINB9P50453 376 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 B3GALT5-AS1P59052 145 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 ETF1P62495 437 aaKnown RBP11.43□□□□□ -0.58
SKA1-205ENST00000494518 CLCQ05315 142 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 ERCC6LQ2NKX8 1250 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 UNC50Q53HI1 259 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 Q5PR19 223 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 RAET1LQ5VY80 246 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 ZNF550Q7Z398 422 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 ZNF572Q7Z3I7 529 aaPredicted RBP11.43□□□□□ -0.58
SKA1-205ENST00000494518 OR7G2Q8NG99 324 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 ZNF675Q8TD23 568 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 DCAKDQ8WVC6 231 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 IFT81Q8WYA0 676 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 SMPDL3BQ92485 455 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 FIG4Q92562 907 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 ANP32BQ92688 251 aaKnown RBP11.43□□□□□ -0.58
SKA1-205ENST00000494518 MTBPQ96DY7 904 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 PIK3IP1Q96FE7 263 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 SLC35A4Q96G79 324 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 APIPQ96GX9 242 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 ZC3HAV1LQ96H79 300 aaKnown RBP11.43□□□□□ -0.58
SKA1-205ENST00000494518 VSTM2LQ96N03 204 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 WFIKKN1Q96NZ8 548 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 TMEM237Q96Q45 408 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 DSN1Q9H410 356 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 BEX4Q9NWD9 120 aaPredicted RBP11.43□□□□□ -0.58
SKA1-205ENST00000494518 NMRK1Q9NWW6 199 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 PLA2G2EQ9NZK7 142 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 SENP1Q9P0U3 644 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 PPP4R1LQ9P1A2 415 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 NDRG3Q9UGV2 375 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 MCM8Q9UJA3 840 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 OR10H1Q9Y4A9 318 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.43□□□□□ -0.58
SKA1-205ENST00000494518 HIVEP2P31629 2446 aa11.43□□□□□ -0.58
SKA1-205ENST00000494518 SLC22A20A6NK97 555 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 SMAD7O15105 426 aaKnown RBP11.42□□□□□ -0.58
SKA1-205ENST00000494518 HCRTR2O43614 444 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 HK1P19367 917 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 HMOX2P30519 316 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 RFX3P48380 749 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 GAS1P54826 345 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 TRA2BP62995 288 aaKnown RBP11.42□□□□□ -0.58
SKA1-205ENST00000494518 GAB1Q13480 694 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 EFR3AQ14156 821 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 PRSS53Q2L4Q9 553 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 CHMP1BQ7LBR1 199 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 BTLAQ7Z6A9 289 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 P3H2Q8IVL5 708 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 CIARTQ8N365 385 aaPredicted RBP11.42□□□□□ -0.58
SKA1-205ENST00000494518 TMEM151AQ8N4L1 468 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 C16orf78Q8WTQ4 265 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 ZNF592Q92610 1267 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 STARD4Q96DR4 205 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 UCN2Q96RP3 112 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 KCNA7Q96RP8 456 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 PIGQQ9BRB3 760 aa11.42□□□□□ -0.58
SKA1-205ENST00000494518 MED18Q9BUE0 208 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms