RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 MAPK1P28482 360 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 KRT20P35900 424 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 FRKP42685 505 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-209ENST00000492270 SNTA1Q13424 505 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 TOMM20Q15388 145 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 PDCD2Q16342 344 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-209ENST00000492270 ZNF630Q2M218 657 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-209ENST00000492270 BEND6Q5SZJ8 279 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-209ENST00000492270 WLSQ5T9L3 541 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 IL23RQ5VWK5 629 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 ANKRD42Q8N9B4 389 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 OR7A2PQ8NGA2 310 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 TUBGCP3Q96CW5 907 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 TMCO6Q96DC7 493 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 SORT1Q99523 831 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 EQTNQ9NQ60 294 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 SLC6A5Q9Y345 797 aa22.53■■□□□ 1.2
UPF3A-209ENST00000492270 C15orf38-AP3S2A0A0A6YYH1 394 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 FIGNL2A6NMB9 653 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 C19orf84I3L1E1 186 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 ABCB7O75027 752 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 ERLIN1O75477 346 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 CYP4B1P13584 511 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 ELAVL4P26378 380 aaKnown RBP22.52■■□□□ 1.2
UPF3A-209ENST00000492270 SLC1A6P48664 564 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 PNLIPRP2P54317 469 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 PMPCAQ10713 525 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 EIPR1Q53HC9 387 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 TMEM211Q6ICI0 200 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 WDSUB1Q8N9V3 476 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 ZFP28Q8NHY6 868 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 MTERF3Q96E29 417 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 ZBED6CLQ96FA7 236 aaPredicted RBP22.52■■□□□ 1.2
UPF3A-209ENST00000492270 PAIP2Q9BPZ3 127 aaKnown RBP22.52■■□□□ 1.2
UPF3A-209ENST00000492270 SERHLQ9NQF3 203 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 ALKBH4Q9NXW9 302 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 ATP6V1HQ9UI12 483 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 RNF6Q9Y252 685 aa22.52■■□□□ 1.2
UPF3A-209ENST00000492270 C17orf51A8MQB3 221 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 IFI6P09912 130 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 HPCAL1P37235 193 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 MANFP55145 182 aaKnown RBP22.51■■□□□ 1.19
UPF3A-209ENST00000492270 CRYZQ08257 329 aaKnown RBP22.51■■□□□ 1.19
UPF3A-209ENST00000492270 GAB1Q13480 694 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 EFR3AQ14156 821 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 WIPI1Q5MNZ9 446 aaPredicted RBP22.51■■□□□ 1.19
UPF3A-209ENST00000492270 CCDC71Q8IV32 467 aaPredicted RBP22.51■■□□□ 1.19
UPF3A-209ENST00000492270 KRTCAP2Q8N6L1 136 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 RNF138Q8WVD3 245 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 LMF2Q9BU23 707 aaKnown RBP22.51■■□□□ 1.19
UPF3A-209ENST00000492270 COQ3Q9NZJ6 369 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 FLRT3Q9NZU0 649 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 CBLCQ9ULV8 474 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 RAP2CQ9Y3L5 183 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 WIF1Q9Y5W5 379 aa22.51■■□□□ 1.19
UPF3A-209ENST00000492270 B4DXG7 233 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 LAMP1P11279 417 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 PRKAG1P54619 331 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 PSPHP78330 225 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 B3GNT6Q6ZMB0 384 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 SZRD1Q7Z422 152 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 R3HCC1LQ7Z5L2 792 aaKnown RBP22.5■■□□□ 1.19
UPF3A-209ENST00000492270 YRDCQ86U90 279 aaKnown RBP22.5■■□□□ 1.19
UPF3A-209ENST00000492270 FAM83FQ8NEG4 500 aaPredicted RBP22.5■■□□□ 1.19
UPF3A-209ENST00000492270 FBXO30Q8TB52 745 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 CA5BP1Q8WTZ4 195 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 RND1Q92730 232 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 MARVELD3Q96A59 401 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 TTYH2Q9BSA4 534 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 Q9N2J8 555 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 ACSS1Q9NUB1 689 aaPredicted RBP22.5■■□□□ 1.19
UPF3A-209ENST00000492270 PKDREJQ9NTG1 2253 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 TEX15Q9BXT5 2789 aa22.5■■□□□ 1.19
UPF3A-209ENST00000492270 GIMAP1-GIMAP5A0A087WTJ2 511 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 GXYLT2A0PJZ3 443 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 TMEM120BA0PK00 339 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 WDR1O75083 606 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 GLI4P10075 376 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 PRPS2P11908 318 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 GRK2P25098 689 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 GAS1P54826 345 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 WDR4P57081 412 aaKnown RBP22.49■■□□□ 1.19
UPF3A-209ENST00000492270 ZNHIT3Q15649 155 aaPredicted RBP22.49■■□□□ 1.19
UPF3A-209ENST00000492270 CYP27C1Q4G0S4 372 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 DCST1Q5T197 706 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 C1orf185Q5T7R7 199 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 OR5M10Q6IEU7 315 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 ULK2Q8IYT8 1036 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 NUP43Q8NFH3 380 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 MGARPQ8TDB4 240 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 PIK3R3Q92569 461 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 GIMAP5Q96F15 307 aa22.49■■□□□ 1.19
UPF3A-209ENST00000492270 SIRT3Q9NTG7 399 aaPredicted RBP22.49■■□□□ 1.19
UPF3A-209ENST00000492270 SCO2O43819 266 aa22.48■■□□□ 1.19
UPF3A-209ENST00000492270 SNRPB2P08579 225 aaKnown RBP22.48■■□□□ 1.19
UPF3A-209ENST00000492270 G6PDP11413 515 aa22.48■■□□□ 1.19
UPF3A-209ENST00000492270 RFX3P48380 749 aa22.48■■□□□ 1.19
UPF3A-209ENST00000492270 RPL14P50914 215 aaKnown RBP22.48■■□□□ 1.19
UPF3A-209ENST00000492270 BST1Q10588 318 aa22.48■■□□□ 1.19
UPF3A-209ENST00000492270 STX3Q13277 289 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms