RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SIAH2O43255 324 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 SMNDC1O75940 238 aaKnown RBP eCLIP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 INHBBP09529 407 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 DPP4P27487 766 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 ADSLP30566 484 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 KRT20P35900 424 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 HTR6P50406 440 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 PNLIPRP2P54317 469 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 B3GALT5-AS1P59052 145 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 EEF1A1P68104 462 aaKnown RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 NKX6-1P78426 367 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 CKAP4Q07065 602 aaKnown RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 FAM27E3Q08E93 113 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 RASA2Q15283 850 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 ERCC6LQ2NKX8 1250 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 UNC50Q53HI1 259 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF678Q5SXM1 525 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 EEF1A1P5Q5VTE0 462 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 SHEQ5VZ18 495 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 P4HA3Q7Z4N8 544 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 GBP7Q8N8V2 638 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 OR7G2Q8NG99 324 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 OR4N2Q8NGD1 307 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 UHMK1Q8TAS1 419 aaKnown RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 ANP32BQ92688 251 aaKnown RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 EFHD2Q96C19 240 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 DTNBP1Q96EV8 351 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 APIPQ96GX9 242 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 TMEM237Q96Q45 408 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 C6orf203Q9P0P8 240 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 NDRG3Q9UGV2 375 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF180Q9UJW8 692 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 EIF3LQ9Y262 564 aaKnown RBP11.21□□□□□ -0.61
CPSF3-204ENST00000489403 NAV3Q8IVL0 2385 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 CTIFO43310 598 aaKnown RBP11.2□□□□□ -0.62
CPSF3-204ENST00000489403 PLOD3O60568 738 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 SUPT7LO94864 414 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 KRT6AP02538 564 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 KRT6BP04259 564 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 CCKARP32238 428 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 EVI2BP34910 448 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 KRT6CP48668 564 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 DSCR4P56555 118 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-204ENST00000489403 CLDN15P56746 228 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 PSPHP78330 225 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 PSG6Q00889 435 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 HEPACAMQ14CZ8 416 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 BCL2A1Q16548 175 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 SPIN4Q56A73 249 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 TEX35Q5T0J7 233 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 SLC44A2Q8IWA5 706 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-204ENST00000489403 UBQLNLQ8IYU4 475 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 SAMD14Q8IZD0 417 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-204ENST00000489403 FAM9CQ8IZT9 166 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 FADS6Q8N9I5 356 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 OR4K17Q8NGC6 315 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 C16orf78Q8WTQ4 265 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 STARD4Q96DR4 205 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 MTBPQ96DY7 904 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 WFIKKN1Q96NZ8 548 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 ZNF382Q96SR6 550 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 FMO2Q99518 471 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 EBPLQ9BY08 206 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 SLC35C2Q9NQQ7 365 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 KLHL28Q9NXS3 571 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 TMEM216Q9P0N5 145 aa11.2□□□□□ -0.62
CPSF3-204ENST00000489403 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.2□□□□□ -0.62
CPSF3-204ENST00000489403 GNG14A0A1W2PPG7 69 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 SLC22A20A6NK97 555 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 DEFB108AA8MXU0 73 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 H0YC42 278 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 SCO2O43819 266 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 ULK1O75385 1050 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 CRHP06850 196 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 PEPDP12955 493 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 ECHS1P30084 290 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 HMOX2P30519 316 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 TIA1P31483 386 aaKnown RBP eCLIP11.19□□□□□ -0.62
CPSF3-204ENST00000489403 KIR2DL2P43627 348 aaPredicted RBP11.19□□□□□ -0.62
CPSF3-204ENST00000489403 TPD52P55327 224 aaPredicted RBP11.19□□□□□ -0.62
CPSF3-204ENST00000489403 SIRPAP78324 504 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 ACSM2AQ08AH3 577 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 ZNF155Q12901 538 aaPredicted RBP11.19□□□□□ -0.62
CPSF3-204ENST00000489403 PRSS53Q2L4Q9 553 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 Q5PR19 223 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 ACSM2BQ68CK6 577 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 OR2A2Q6IF42 318 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 ZNF474Q6S9Z5 364 aaPredicted RBP11.19□□□□□ -0.62
CPSF3-204ENST00000489403 CLEC9AQ6UXN8 241 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 GPRIN3Q6ZVF9 776 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 CHMP1BQ7LBR1 199 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 BTLAQ7Z6A9 289 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 CNEP1R1Q8N9A8 125 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 OR2M3Q8NG83 312 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 METTL6Q8TCB7 284 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 FIG4Q92562 907 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 ZNF592Q92610 1267 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 C11orf24Q96F05 449 aaPredicted RBP11.19□□□□□ -0.62
CPSF3-204ENST00000489403 FAM111AQ96PZ2 611 aa11.19□□□□□ -0.62
CPSF3-204ENST00000489403 PIP5K1AQ99755 562 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms