RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	MEP1A	Q16819	746 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	METTL21C	Q5VZV1	264 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	FAM219B	Q5XKK7	198 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	FAM71E1	Q6IPT2	247 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	SLC48A1	Q6P1K1	146 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	SULF2	Q8IWU5	870 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	MMP21	Q8N119	569 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	MIER2	Q8N344	545 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	MDS2	Q8NDY4	140 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	CLHC1	Q8NHS4	586 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	ZFP28	Q8NHY6	868 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	NRGN	Q92686	78 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	DAZL	Q92904	295 aa	Known RBP	8.08	□□□□□ -1.12
USP4-213	ENST00000488520	EXOSC8	Q96B26	276 aa	Known RBP	8.08	□□□□□ -1.12
USP4-213	ENST00000488520	PPCDC	Q96CD2	204 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	KLHL29	Q96CT2	875 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	WDR89	Q96FK6	387 aa	Predicted RBP	8.08	□□□□□ -1.12
USP4-213	ENST00000488520	SCMH1	Q96GD3	660 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	ART5	Q96L15	291 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	FRMD6	Q96NE9	622 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	LPAR4	Q99677	370 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	TMEM120A	Q9BXJ8	343 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF717	Q9BY31	904 aa	Predicted RBP	8.08	□□□□□ -1.12
USP4-213	ENST00000488520	TEX10	Q9NXF1	929 aa	Predicted RBP	8.08	□□□□□ -1.12
USP4-213	ENST00000488520	ASIC5	Q9NY37	505 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	FAM53C	Q9NYF3	392 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	COQ3	Q9NZJ6	369 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	EHD3	Q9NZN3	535 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	KLHL14	Q9P2G3	628 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	GIMAP2	Q9UG22	337 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	HEATR5A	Q86XA9	2040 aa		8.08	□□□□□ -1.12
USP4-213	ENST00000488520	NKX2-6	A6NCS4	301 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	FAM90A27P	A6NNH2	459 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	GABRR3	A8MPY1	467 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520		E9PBE3	544 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	PRRG2	O14669	202 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	ADAM10	O14672	748 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	CFLAR	O15519	480 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	CCDC22	O60826	627 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	JUN	P05412	331 aa	Known RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SP1	P08047	785 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SLC35E2	P0CK97	266 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	CD99	P14209	185 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SDC1	P18827	310 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	NT5E	P21589	574 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	FEN1	P39748	380 aa	Known RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SEC24C	P53992	1094 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	NME5	P56597	212 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	PLIN5	Q00G26	463 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	RHAG	Q02094	409 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SFT2D3	Q587I9	215 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	ANXA8L1	Q5VT79	327 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	PLAG1	Q6DJT9	500 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	OGFOD2	Q6N063	350 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	H3F3C	Q6NXT2	135 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SPATA21	Q7Z572	469 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	ANKRD37	Q7Z713	158 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	ZAR1	Q86SH2	424 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	TMEM200A	Q86VY9	491 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SIAH3	Q8IW03	269 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	ST13P4	Q8IZP2	240 aa	Predicted RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	GHDC	Q8N2G8	530 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	LRRC25	Q8N386	305 aa	Predicted RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	CPSF7	Q8N684	471 aa	Known RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	TMEM178A	Q8NBL3	297 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	FAM98A	Q8NCA5	519 aa	Known RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	GLB1L3	Q8NCI6	653 aa	Predicted RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	RFWD2	Q8NHY2	731 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	RIT1	Q92963	219 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	PPWD1	Q96BP3	646 aa	Known RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	MAEL	Q96JY0	434 aa	Known RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	EGLN2	Q96KS0	407 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF317	Q96PQ6	595 aa	Predicted RBP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	OR52B2	Q96RD2	323 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	DMRTA2	Q96SC8	542 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	CSF3R	Q99062	836 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	UCK2	Q9BZX2	261 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	BRINP2	Q9C0B6	783 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	CDCP1	Q9H5V8	836 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SLC35C2	Q9NQQ7	365 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	NECTIN3	Q9NQS3	549 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	LANCL2	Q9NS86	450 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	8.07	□□□□□ -1.12
USP4-213	ENST00000488520	LRFN1	Q9P244	771 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	COPS7A	Q9UBW8	275 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	VPS13C	Q709C8	3753 aa		8.07	□□□□□ -1.12
USP4-213	ENST00000488520	MYOCOS	A0A1B0GUC4	107 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520		A0A1W2PRB8	838 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	TCRBV16S1A1N1	A0A5B0	115 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ASPDH	A6ND91	283 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520		E9PLN8	166 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF195	O14628	629 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	PDPK1	O15530	556 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	FGF17	O60258	216 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	CDC40	O60508	579 aa	Known RBP eCLIP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	PRKRA	O75569	313 aa	Known RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	BCAS2	O75934	225 aa	Predicted RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	IL6	P05231	212 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	TPO	P07202	933 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	CPM	P14384	443 aa		8.06	□□□□□ -1.12

Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms