RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 C1orf226A1L170 272 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 HMX2A2RU54 273 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 GOLGA6L10A6NI86 522 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 ABCB7O75027 752 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 ERAL1O75616 437 aaKnown RBP13.78□□□□□ -0.2
MCF2L-228ENST00000487354 REM1O75628 298 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 CSNK2A2P19784 350 aaPredicted RBP13.78□□□□□ -0.2
MCF2L-228ENST00000487354 SPRP35270 261 aaPredicted RBP13.78□□□□□ -0.2
MCF2L-228ENST00000487354 KCNJ5P48544 419 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 DSCR4P56555 118 aaPredicted RBP13.78□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF844Q08AG5 666 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 PON3Q15166 354 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 CLEC12BQ2HXU8 276 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 CCNYL2Q5T2Q4 361 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 GRTP1Q5TC63 336 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 RAPH1Q70E73 1250 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 COMMD6Q7Z4G1 85 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 TBC1D1Q86TI0 1168 aaPredicted RBP13.78□□□□□ -0.2
MCF2L-228ENST00000487354 HIPK1Q86Z02 1210 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 CREG2Q8IUH2 290 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 METTL25Q8N6Q8 603 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 GBP7Q8N8V2 638 aaPredicted RBP13.78□□□□□ -0.2
MCF2L-228ENST00000487354 OR4N2Q8NGD1 307 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 OR5M1Q8NGP8 315 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF675Q8TD23 568 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 KLHL29Q96CT2 875 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 PLPPR2Q96GM1 343 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 ZBTB26Q9HCK0 441 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 SAYSD1Q9NPB0 183 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 FLRT3Q9NZU0 649 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 TXNDC16Q9P2K2 825 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 PRODH2Q9UF12 536 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 PROCRQ9UNN8 238 aa13.78□□□□□ -0.2
MCF2L-228ENST00000487354 SYCE1LA8MT33 242 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 SEC14L5O43304 696 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 CD5LO43866 347 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 CLDN9O95484 217 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 GFAPP14136 432 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 CRABP2P29373 138 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 SLC6A8P48029 635 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 MAPK12P53778 367 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 MRPS25P82663 173 aaKnown RBP13.77□□□□□ -0.21
MCF2L-228ENST00000487354 VEZF1Q14119 521 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 FRG2Q64ET8 278 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 PODNL1Q6PEZ8 512 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 FAM214BQ7L5A3 538 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 GGNQ86UU5 652 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 RAB3IL1Q8TBN0 382 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 TRPC4APQ8TEL6 797 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 EFHD2Q96C19 240 aaPredicted RBP13.77□□□□□ -0.21
MCF2L-228ENST00000487354 NSUN5Q96P11 429 aaKnown RBP13.77□□□□□ -0.21
MCF2L-228ENST00000487354 FRG2BQ96QU4 278 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 REG4Q9BYZ8 158 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 DSN1Q9H410 356 aa13.77□□□□□ -0.21
MCF2L-228ENST00000487354 NOL11Q9H8H0 719 aaKnown RBP13.77□□□□□ -0.21
MCF2L-228ENST00000487354 FARSBQ9NSD9 589 aaKnown RBP13.77□□□□□ -0.21
MCF2L-228ENST00000487354 OR2M5A3KFT3 312 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 SOD3P08294 240 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 DANCRP0C864 163 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 HK1P19367 917 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 EVI2BP34910 448 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 EFR3AQ14156 821 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 FGFBP1Q14512 234 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 EXOC3L2Q2M3D2 409 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 TMEM44Q2T9K0 475 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 C10orf62Q5T681 223 aaPredicted RBP13.76□□□□□ -0.21
MCF2L-228ENST00000487354 RAET1LQ5VY80 246 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 LARP4Q71RC2 724 aaKnown RBP eCLIP13.76□□□□□ -0.21
MCF2L-228ENST00000487354 CTAGE3PQ8IX95 158 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 OR4K17Q8NGC6 315 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 AKAP1Q92667 903 aaKnown RBP eCLIP13.76□□□□□ -0.21
MCF2L-228ENST00000487354 NTMT1Q9BV86 223 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 PLSCR4Q9NRQ2 329 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 LAMP3Q9UQV4 416 aa13.76□□□□□ -0.21
MCF2L-228ENST00000487354 A0A096LNT2 108 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 H3BML4 177 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 TLX2O43763 284 aaPredicted RBP13.75□□□□□ -0.21
MCF2L-228ENST00000487354 SCO2O43819 266 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 FADS1O60427 444 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 F12P00748 615 aaPredicted RBP13.75□□□□□ -0.21
MCF2L-228ENST00000487354 C2P06681 752 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 PPP3CBP16298 524 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 TCP1P17987 556 aaKnown RBP13.75□□□□□ -0.21
MCF2L-228ENST00000487354 PNLIPRP2P54317 469 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 RPS4XP62701 263 aaKnown RBP13.75□□□□□ -0.21
MCF2L-228ENST00000487354 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.75□□□□□ -0.21
MCF2L-228ENST00000487354 TECRLQ5HYJ1 363 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 ADAM5Q6NVV9 412 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 METTL2BQ6P1Q9 378 aaKnown RBP13.75□□□□□ -0.21
MCF2L-228ENST00000487354 SEZ6L2Q6UXD5 910 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 C3orf62Q6ZUJ4 267 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 CHMP1BQ7LBR1 199 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 PAGE2Q7Z2X7 111 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 PPM1NQ8N819 430 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 OR9A2Q8NGT5 310 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 OR6K3Q8NGY3 331 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 KAT2AQ92830 837 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 FOLH1BQ9HBA9 442 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 GRHL1Q9NZI5 618 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 MED11Q9P086 117 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms