RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 AGAP7PQ5VUJ5 663 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 BORAQ6PGQ7 559 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 FIGNL1Q6PIW4 674 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 C16orf62Q7Z3J2 963 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 SERPINA11Q86U17 422 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 SLC34A3Q8N130 599 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 ARMC10Q8N2F6 343 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 TMEM156Q8N614 296 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 SLC15A4Q8N697 577 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 BCORP1Q8N888 145 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 FDCSPQ8NFU4 85 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 SNRNP27Q8WVK2 155 aaKnown RBP11.3□□□□□ -0.6
SDC1-206ENST00000482879 TMBIM1Q969X1 311 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 ZNF583Q96ND8 569 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 AGAP4Q96P64 663 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 LMF1Q96S06 567 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 RASL10BQ96S79 203 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 BTBD10Q9BSF8 475 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 STMN3Q9NZ72 180 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 TMEM181Q9P2C4 612 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 P2RX2Q9UBL9 471 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 MRTO4Q9UKD2 239 aaKnown RBP11.3□□□□□ -0.6
SDC1-206ENST00000482879 LIPT1Q9Y234 373 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 NPFFR2Q9Y5X5 522 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 PRAMEF27A3QJZ7 478 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 TMEM247A6NEH6 219 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 SLC28A2O43868 658 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ZNF354AO60765 605 aaPredicted RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 KCNK2O95069 426 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 AK1P00568 194 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 NR2F1P10589 423 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ABCD3P28288 659 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 SOX11P35716 441 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 KRT20P35900 424 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 PIGAP37287 484 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 SOX3P41225 446 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ST13P50502 369 aaKnown RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 GZMMP51124 257 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 SSR4P51571 173 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 EEFSECP57772 596 aaKnown RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 PSPHP78330 225 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 PLCXD2Q0VAA5 305 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ADRM1Q16186 407 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 SYPL1Q16563 259 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 TBR1Q16650 682 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ZSCAN26Q16670 478 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ARHGAP11BQ3KRB8 267 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 DNAL1Q4LDG9 190 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 GPAT3Q53EU6 434 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 LACTB2Q53H82 288 aaPredicted RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 DCST2Q5T1A1 773 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 CCNJQ5T5M9 372 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 HEPHL1Q6MZM0 1159 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 OPN5Q6U736 354 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ISLR2Q6UXK2 745 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 BNC2Q6ZN30 1099 aaPredicted RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 LINC00696Q6ZRV3 163 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 NET1Q7Z628 596 aaPredicted RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 IFNEQ86WN2 208 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 CALHM3Q86XJ0 350 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 BEST3Q8N1M1 668 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ANKFN1Q8N957 763 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 CHDHQ8NE62 594 aaPredicted RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 FAM110BQ8TC76 370 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ASB15Q8WXK1 588 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 MAL2Q969L2 176 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 OMA1Q96E52 524 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 SDF2Q99470 211 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 SPATA9Q9BWV2 254 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ZNF552Q9H707 407 aaPredicted RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 A4GALTQ9NPC4 353 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ABI3Q9P2A4 366 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 GMPR2Q9P2T1 348 aaKnown RBP11.29□□□□□ -0.6
SDC1-206ENST00000482879 ABCD2Q9UBJ2 740 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 PACSIN3Q9UKS6 424 aa11.29□□□□□ -0.6
SDC1-206ENST00000482879 ZFHX4Q86UP3 3567 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 FAM220BPB1ANY3 271 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 C5orf58C9J3I9 102 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 PPM1BO75688 479 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 CEACAM4O75871 244 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 OR6B1O95007 311 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 IL33O95760 270 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 IGKV1D-16P01601 117 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 ALPPP05187 535 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 BCHEP06276 602 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 TFPTP0C1Z6 253 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 ARAFP10398 606 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 NAGAP17050 411 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 ATP6V1C1P21283 382 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 IL12BP29460 328 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 GSK3BP49841 420 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 PSMD4P55036 377 aaKnown RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 NCALDP61601 193 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 CDK6Q00534 326 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 RBBP4Q09028 425 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 FUT5Q11128 374 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 ZNF630Q2M218 657 aaPredicted RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 SAMD4BQ5PRF9 694 aaKnown RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 LYPD8Q6UX82 237 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 IL20RBQ6UXL0 311 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms