RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TM7SF3Q9NS93 570 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 COMMD9Q9P000 198 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 HCN3Q9P1Z3 774 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 GRHPRQ9UBQ7 328 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 CA5AP35218 305 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF852Q6ZMS4 543 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 TMEM150AQ86TG1 271 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 OR2L3Q8NG85 312 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 C1orf216Q8TAB5 229 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 CDS1Q92903 461 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 NIPSNAP1Q9BPW8 284 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 NTN4Q9HB63 628 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 SCN4AP35499 1836 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 A0A0J9YY10 115 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 SLC35F4A4IF30 521 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 KCNJ10P78508 379 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF91Q05481 1191 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 ILKQ13418 452 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF791Q3KP31 576 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-220ENST00000477528 Q6ZSR6 202 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 PJA1Q8NG27 643 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 C15orf40Q8WUR7 153 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 TANKQ92844 425 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 DPAGT1Q9H3H5 408 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 ENAMQ9NRM1 1142 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 CXXC1Q9P0U4 656 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-220ENST00000477528 NDRG4Q9ULP0 352 aaKnown RBP13.78□□□□□ -0.2
HDAC6-220ENST00000477528 PMF1-BGLAPU3KQ54 211 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 ANKRD28O15084 1053 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 PRKYO43930 277 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 RGS9O75916 674 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-220ENST00000477528 CSF2P04141 144 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 F3P13726 295 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 TGFBR2P37173 567 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 KCNJ5P48544 419 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 SLC35A2P78381 396 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 GAS6Q14393 721 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 TMEM240Q5SV17 173 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 CALHM3Q86XJ0 350 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 DEFB119Q8N690 84 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 VN1R2Q8NFZ6 395 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 HSPA12BQ96MM6 686 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 AMDHD1Q96NU7 426 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 TAAR2Q9P1P5 351 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 IL20RAQ9UHF4 553 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 SERTAD3Q9UJW9 196 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 CD8B2A6NJW9 211 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 ECDO95905 644 aaPredicted RBP13.77□□□□□ -0.2
HDAC6-220ENST00000477528 CD8BP10966 210 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 GP1BBP13224 206 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 NNATQ16517 81 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 ALG10BQ5I7T1 473 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 CEACAM19Q7Z692 300 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 CPOQ8IVL8 374 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 SLITRK4Q8IW52 837 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 Q8N402 240 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 SAMD12Q8N8I0 201 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 CHFRQ96EP1 664 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 GLIPR2Q9H4G4 154 aa13.77□□□□□ -0.2
HDAC6-220ENST00000477528 PRAMEF26H0Y7S4 382 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 PYCR1P32322 319 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 RHAGQ02094 409 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 RELAQ04206 551 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 VRK2Q86Y07 508 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 ZNF440Q8IYI8 595 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 TMEM163Q8TC26 289 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 ACOT12Q8WYK0 555 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 SHDQ96IW2 340 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 ABCG4Q9H172 646 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 KRBA1A5PL33 1030 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 ETHE1O95571 254 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 CD83Q01151 205 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 ZNF385BQ569K4 471 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 PTOV1Q86YD1 416 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 ADAMTS16Q8TE57 1224 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 ZDHHC1Q8WTX9 485 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 OR4K3Q96R72 315 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 POLDIP3Q9BY77 421 aaKnown RBP13.77□□□□□ -0.21
HDAC6-220ENST00000477528 DPH1Q9BZG8 443 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 PCDHGA6Q9Y5G7 932 aa13.77□□□□□ -0.21
HDAC6-220ENST00000477528 KIR2DS5A0A0G2JLQ3 304 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 A0A0G2JNG1 304 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 A0A1B0GVT2 93 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 OR6C70A6NIJ9 312 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 KIR2DS3K7RE56 304 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 HTR1AP08908 422 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 MAPK3P27361 379 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-220ENST00000477528 GMFBP60983 142 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 PUM1Q14671 1186 aaKnown RBP eCLIP13.76□□□□□ -0.21
HDAC6-220ENST00000477528 KIR2DS5Q14953 304 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 KIAA0040Q15053 153 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 UBE2Q1Q7Z7E8 422 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 PEX11GQ96HA9 241 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 GFRA2O00451 464 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 EIF2DP41214 584 aaKnown RBP13.76□□□□□ -0.21
HDAC6-220ENST00000477528 XCR1P46094 333 aa13.76□□□□□ -0.21
HDAC6-220ENST00000477528 MLLT11Q13015 90 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-220ENST00000477528 C8orf82Q6P1X6 216 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-220ENST00000477528 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-220ENST00000477528 TMEM239Q8WW34 195 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms