RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	DUSP8	Q13202	625 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	EXOSC7	Q15024	291 aa	Known RBP	13.85	□□□□□ -0.19
VARS-223	ENST00000474643	HSPB2	Q16082	182 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	C6orf136	Q5SQH8	315 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	OR52R1	Q8NGF1	315 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	OR9A2	Q8NGT5	310 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	LRRC8C	Q8TDW0	803 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	KAT2A	Q92830	837 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	DTNBP1	Q96EV8	351 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	HSPBAP1	Q96EW2	488 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	C7orf26	Q96N11	449 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	SORT1	Q99523	831 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	NUF2	Q9BZD4	464 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	REEP4	Q9H6H4	257 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.85	□□□□□ -0.19
VARS-223	ENST00000474643	PNPO	Q9NVS9	261 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	PRODH2	Q9UF12	536 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	KCNN3	Q9UGI6	736 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	FAM215A	Q9Y5M1	114 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	OTOG	Q6ZRI0	2925 aa		13.85	□□□□□ -0.19
VARS-223	ENST00000474643	DNAJC13	O75165	2243 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643		A0A0G2JNJ9	132 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	ANKRD33B	A6NCL7	494 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	SLCO1B7	G3V0H7	640 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	DVL2	O14641	736 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	GNB5	O14775	395 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	PDPK1	O15530	556 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	BCAS2	O75934	225 aa	Predicted RBP	13.84	□□□□□ -0.19
VARS-223	ENST00000474643	GPC1	P35052	558 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	RPL3	P39023	403 aa	Known RBP	13.84	□□□□□ -0.19
VARS-223	ENST00000474643	MDH1	P40925	334 aa	Known RBP	13.84	□□□□□ -0.19
VARS-223	ENST00000474643	TRMT12	Q53H54	448 aa	Known RBP	13.84	□□□□□ -0.19
VARS-223	ENST00000474643	RIPPLY2	Q5TAB7	128 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	IL23R	Q5VWK5	629 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	FBXW10	Q5XX13	1052 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	BICRAL	Q6AI39	1079 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	ANKRD26P1	Q6NSI1	321 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	R3HCC1L	Q7Z5L2	792 aa	Known RBP	13.84	□□□□□ -0.19
VARS-223	ENST00000474643	DMRTC2	Q8IXT2	367 aa	Predicted RBP	13.84	□□□□□ -0.19
VARS-223	ENST00000474643	ULK2	Q8IYT8	1036 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	ZNF615	Q8N8J6	731 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	OR1J4	Q8NGS1	313 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	SPPL2A	Q8TCT8	520 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	FCRL1	Q96LA6	429 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	GNRHR2	Q96P88	292 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	MARCO	Q9UEW3	520 aa	Predicted RBP	13.84	□□□□□ -0.19
VARS-223	ENST00000474643		Q9UFV3	132 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	C15orf41	Q9Y2V0	281 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	PCDHGB3	Q9Y5G1	929 aa		13.84	□□□□□ -0.19
VARS-223	ENST00000474643	MYO1G	B0I1T2	1018 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	ACOX3	O15254	700 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	TRIM3	O75382	744 aa	Predicted RBP	13.83	□□□□□ -0.2
VARS-223	ENST00000474643	PPM1B	O75688	479 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	IL2RA	P01589	272 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	CLPS	P04118	112 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	PRPS2	P11908	318 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	ENDOU	P21128	410 aa	Known RBP	13.83	□□□□□ -0.2
VARS-223	ENST00000474643	BMP5	P22003	454 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	GPX3	P22352	226 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	KRTAP10-9	P60411	292 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	OCRL	Q01968	901 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	TFF3	Q07654	80 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	RCAN2	Q14206	197 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	ANGPTL8	Q6UXH0	198 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF441	Q8N8Z8	693 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	C17orf47	Q8NEP4	570 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	ZFP28	Q8NHY6	868 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF675	Q8TD23	568 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	OMA1	Q96E52	524 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	LCOR	Q96JN0	433 aa	Predicted RBP	13.83	□□□□□ -0.2
VARS-223	ENST00000474643	OSBPL11	Q9BXB4	747 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	ITPA	Q9BY32	194 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	ANGPTL4	Q9BY76	406 aa		13.83	□□□□□ -0.2
VARS-223	ENST00000474643	NXF5	Q9H1B4	397 aa	Known RBP	13.83	□□□□□ -0.2
VARS-223	ENST00000474643	NOP53	Q9NZM5	478 aa	Known RBP	13.83	□□□□□ -0.2
VARS-223	ENST00000474643	PHF3	Q92576	2039 aa	Known RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	TRPC5OS	A6NMA1	111 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	AHRR	A9YTQ3	701 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	IL12B	P29460	328 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	ADH7	P40394	386 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	PEX19	P40855	299 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	CDK9	P50750	372 aa	Known RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	MANF	P55145	182 aa	Known RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	DCAF7	P61962	342 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	MGAT2	Q10469	447 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	HSPB3	Q12988	150 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	ZNF628	Q5EBL2	1059 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	RTL6	Q6ICC9	239 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	ARSK	Q6UWY0	536 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	TMEM107	Q6UX40	140 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	SZRD1	Q7Z422	152 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	LACC1	Q8IV20	430 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	LRRC34	Q8IZ02	419 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	OR14L1P	Q8NHC6	308 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	STON2	Q8WXE9	905 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	ADIPOR1	Q96A54	375 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	CIDEC	Q96AQ7	238 aa	Predicted RBP	13.82	□□□□□ -0.2
VARS-223	ENST00000474643	TMCO6	Q96DC7	493 aa		13.82	□□□□□ -0.2
VARS-223	ENST00000474643	MTERF3	Q96E29	417 aa		13.82	□□□□□ -0.2

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