RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 SPENQ96T58 3664 aaKnown RBP13.02□□□□□ -0.33
VAMP4-203ENST00000474047 C2orf72A6NCS6 295 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 LRRC3CA6NJW4 275 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 HDAC3O15379 428 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 SUSD5O60279 629 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 TSPAN2O60636 221 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 HCN1O60741 890 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 SNNO75324 88 aaPredicted RBP13.02□□□□□ -0.33
VAMP4-203ENST00000474047 KCNH1O95259 989 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 IGHG3P01860 377 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 GP1BBP13224 206 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 ELAVL4P26378 380 aaKnown RBP13.02□□□□□ -0.33
VAMP4-203ENST00000474047 FRKP42685 505 aaPredicted RBP13.02□□□□□ -0.33
VAMP4-203ENST00000474047 TRPC1P48995 793 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 PSG6Q00889 435 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 GAB1Q13480 694 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 FGD2Q7Z6J4 655 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 OR5P2Q8WZ92 322 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 JADE3Q92613 823 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 SARAFQ96BY9 339 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 DTNBP1Q96EV8 351 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 SLC35A4Q96G79 324 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 CCDC120Q96HB5 630 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 TMEM41AQ96HV5 264 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 GNRHR2Q96P88 292 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 MS4A4EQ96PG1 132 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 DUSP26Q9BV47 211 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 VIPAS39Q9H9C1 493 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 MEMO1Q9Y316 297 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 LIPGQ9Y5X9 500 aa13.02□□□□□ -0.33
VAMP4-203ENST00000474047 EXPH5Q8NEV8 1989 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 USP9XQ93008 2570 aaPredicted RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 OR14I1A6ND48 311 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 HMGB1P1B2RPK0 211 aaPredicted RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 BCKDKO14874 412 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 H2AFXP16104 143 aaPredicted RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 PRIM2P49643 509 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 CLK3P49761 638 aaKnown RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 DIO3P55073 304 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 MLC1Q15049 377 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 WLSQ5T9L3 541 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 TIGD3Q6B0B8 471 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 NXNQ6DKJ4 435 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 TMEM81Q6P7N7 255 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 RPTNQ6XPR3 784 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 MAMDC2Q7Z304 686 aaPredicted RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 CDRT4Q8N9R6 151 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 OR5M9Q8NGP3 310 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 ZNF75CPQ92670 426 aaPredicted RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 COQ8BQ96D53 544 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 PHF12Q96QT6 1004 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 LMF2Q9BU23 707 aaKnown RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 BHLHE41Q9C0J9 482 aaPredicted RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 TP63Q9H3D4 680 aaPredicted RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 GALNT9Q9HCQ5 603 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 ZCCHC3Q9NUD5 404 aaKnown RBP13.01□□□□□ -0.33
VAMP4-203ENST00000474047 ALKBH4Q9NXW9 302 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 PCDHGB4Q9UN71 923 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 ZNF407Q9C0G0 2248 aa13.01□□□□□ -0.33
VAMP4-203ENST00000474047 GOLGA8QA0A0J9YX86 632 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 GOLGA8OA6NCC3 632 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 E9PLN8 166 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 GOLGA8NF8WBI6 632 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 AQP7O14520 342 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 PSMG1O95456 288 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 C6orf47O95873 294 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 ALOX5P09917 674 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 GCKP35557 465 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 CCT3P49368 545 aaKnown RBP13□□□□□ -0.33
VAMP4-203ENST00000474047 GXYLT1Q4G148 440 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 TTMPQ5BVD1 217 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 TMEM211Q6ICI0 200 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 ZNF585AQ6P3V2 769 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 MRGPRGQ86SM5 289 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 WDR75Q8IWA0 830 aaKnown RBP13□□□□□ -0.33
VAMP4-203ENST00000474047 CHERPQ8IWX8 916 aaKnown RBP13□□□□□ -0.33
VAMP4-203ENST00000474047 RIMKLAQ8IXN7 391 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 LRRC34Q8IZ02 419 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 VPS37AQ8NEZ2 397 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 FBXO30Q8TB52 745 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 LRRC8CQ8TDW0 803 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 RMND5BQ96G75 393 aaPredicted RBP13□□□□□ -0.33
VAMP4-203ENST00000474047 VKORC1Q9BQB6 163 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 SLC6A15Q9H2J7 730 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 ACBD3Q9H3P7 528 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 ACKR4Q9NPB9 350 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 C15orf41Q9Y2V0 281 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 DNAJC13O75165 2243 aa13□□□□□ -0.33
VAMP4-203ENST00000474047 C15orf38-AP3S2A0A0A6YYH1 394 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 A0A1B0GVC2 190 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 KLF11O14901 512 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 CYP4B1P13584 511 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 SOAT1P35610 550 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 TP53BP2Q13625 1128 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 ZCCHC12Q6PEW1 402 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 SPATA19Q7Z5L4 167 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 ZNF808Q8N4W9 903 aaPredicted RBP12.99□□□□□ -0.33
VAMP4-203ENST00000474047 OR56A1Q8NGH5 318 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 NEIL3Q8TAT5 605 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 NUDT8Q8WV74 236 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms