RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	EXOSC1	Q9Y3B2	195 aa	Known RBP	2.93	□□□□□ -1.94
PTCD3-209	ENST00000472044	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	2.93	□□□□□ -1.94
PTCD3-209	ENST00000472044	CFAP65	Q6ZU64	1925 aa	Known RBP	2.93	□□□□□ -1.94
PTCD3-209	ENST00000472044	ABCA7	Q8IZY2	2146 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	MET	P08581	1390 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	PARD3	Q8TEW0	1356 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ANKRD30BL	A7E2S9	258 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	FAM220BP	B1ANY3	271 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	WASH3P	C4AMC7	463 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044		H0YL77	283 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	B3GALNT1	O75752	331 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	GJB5	O95377	273 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	H2AFZ	P0C0S5	128 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	AXL	P30530	894 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	OR1D4	P47884	311 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ARHGDIB	P52566	201 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	SCGB2A2	Q13296	93 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	RAB35	Q15286	201 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ADPRM	Q3LIE5	342 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	LDLRAP1	Q5SW96	308 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	SPINK14	Q6IE38	97 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ZNF774	Q6NX45	483 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ARSK	Q6UWY0	536 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ISLR2	Q6UXK2	745 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	WASH2P	Q6VEQ5	465 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	HACD2	Q6Y1H2	254 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	TMEM184A	Q6ZMB5	413 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	GCNT7	Q6ZNI0	430 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	P2RY8	Q86VZ1	359 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ERICH1	Q86X53	443 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	TFB1M	Q8WVM0	346 aa	Known RBP	2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	RANBP9	Q96S59	729 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	CCSER1	Q9C0I3	900 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	KAT8	Q9H7Z6	458 aa	Known RBP	2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ACTR8	Q9H981	624 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	LPAR2	Q9HBW0	351 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	HPF1	Q9NWY4	346 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	EIF3L	Q9Y262	564 aa	Known RBP	2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	NOTCH3	Q9UM47	2321 aa		2.92	□□□□□ -1.94
PTCD3-209	ENST00000472044	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	SAP18	O00422	153 aa	Known RBP	2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	CHAD	O15335	359 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	CLDN3	O15551	220 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	VPS26A	O75436	327 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	RHBDL1	O75783	438 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	ANXA4	P09525	319 aa	Predicted RBP	2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	CT45A10	P0DMU9	189 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	HTR5A	P47898	357 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	ALDH3B2	P48448	385 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	EMD	P50402	254 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	RPS6	P62753	249 aa	Known RBP	2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	PAX2	Q02962	417 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	RUNX3	Q13761	415 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	DCAF4L1	Q3SXM0	396 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	LGSN	Q5TDP6	509 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	OLFML2A	Q68BL7	652 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	LRRC8B	Q6P9F7	803 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	BTNL3	Q6UXE8	466 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	LPCAT2	Q7L5N7	544 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	PRSS48	Q7RTY5	328 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	CBWD2	Q8IUF1	395 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	MISP	Q8IVT2	679 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	TYMSOS	Q8TAI1	123 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	ZNF671	Q8TAW3	534 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	VN1R17P	Q8TDU5	208 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	TAF4B	Q92750	862 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	ART4	Q93070	314 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	VSTM2L	Q96N03	204 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	FEM1A	Q9BSK4	669 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	TIGAR	Q9NQ88	270 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	EXOSC3	Q9NQT5	275 aa	Known RBP	2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	POLE3	Q9NRF9	147 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	YAE1D1	Q9NRH1	226 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	ANKMY1	Q9P2S6	941 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	GALP	Q9UBC7	116 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	BARX2	Q9UMQ3	279 aa	Predicted RBP	2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	RNF6	Q9Y252	685 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044		U3KQV3	271 aa		2.91	□□□□□ -1.94
PTCD3-209	ENST00000472044	CCDC7	Q96M83	1385 aa		2.9	□□□□□ -1.94
PTCD3-209	ENST00000472044		A0A0U1RQV5	110 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044		A0A1W2PQ72	361 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	WASHC1	A8K0Z3	465 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	SLC17A2	O00624	439 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	LCMT2	O60294	686 aa	Known RBP	2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	AKR7A3	O95154	331 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	LAMP1	P11279	417 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	UQCRB	P14927	111 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	TSPAN8	P19075	237 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	HMGCL	P35914	325 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	MTTP	P55157	894 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	EXOSC2	Q13868	293 aa	Known RBP	2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	TFDP1	Q14186	410 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	RFTN1	Q14699	578 aa	Predicted RBP	2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	TIMM50	Q3ZCQ8	353 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	DCST2	Q5T1A1	773 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	UTF1	Q5T230	341 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	ATAD3C	Q5T2N8	411 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	PNCK	Q6P2M8	343 aa		2.9	□□□□□ -1.95
PTCD3-209	ENST00000472044	SLC39A4	Q6P5W5	647 aa		2.9	□□□□□ -1.95

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