RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TMEM163Q8TC26 289 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 CREB3L4Q8TEY5 395 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 KATNB1Q9BVA0 655 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 MS4A8Q9BY19 250 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 POLDIP3Q9BY77 421 aaKnown RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 DIMT1Q9UNQ2 313 aaKnown RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 A0A087WUU8 490 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ZC3H12DA2A288 527 aaKnown RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 CENPBD1B2RD01 187 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 HMGN1P05114 100 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ACP2P11117 423 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ACVR2AP27037 513 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TLX1P31314 330 aaPredicted RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 ACSL1P33121 698 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 SEC13P55735 322 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 SIM1P81133 766 aaPredicted RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 SAXO2Q658L1 398 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 CAMKMTQ7Z624 323 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 NRSN1Q8IZ57 195 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ELMOD2Q8IZ81 293 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 NATD1Q8N6N6 113 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 OR2T33Q8NG76 320 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 OR2L2Q8NH16 312 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ZNF431Q8TF32 576 aaPredicted RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 DPH1Q9BZG8 443 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 NDUFB11Q9NX14 153 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 RPS6KB2Q9UBS0 482 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 CDV3Q9UKY7 258 aaKnown RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 LOC105369274A0A096LPK9 316 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ABHD14A-ACY1A0A1B0GW23 586 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 SOCS6O14544 535 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 FKTNO75072 461 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 SLC2A10O95528 541 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 GKN3PP0CG01 181 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 EPCAMP16422 314 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ERP29P30040 261 aaKnown RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 KIR2DL3P43628 341 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 RAB40BQ12829 278 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 LTB4RQ15722 352 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 VITQ6UXI7 678 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ABI3BPQ7Z7G0 1075 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 OR4N4Q8N0Y3 316 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 LINC00471Q8N535 108 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 PRRC1Q96M27 445 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 SGPP1Q9BX95 441 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 CERS4Q9HA82 394 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 A4GALTQ9NPC4 353 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 PAK6Q9NQU5 681 aaPredicted RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 GABRPO00591 440 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 AKR7A2O43488 359 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 LCMT2O60294 686 aaKnown RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 STX11O75558 287 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 UBXN7O94888 489 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ADRA2AP08913 450 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 GABRB1P18505 474 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 PYCR1P32322 319 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 SLC1A3P43003 542 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 CCR4P51679 360 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 RNF44Q7L0R7 432 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 ANKRD53Q8N9V6 530 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 BEST4Q8NFU0 473 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 OR56A1Q8NGH5 318 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 OR4C6Q8NH72 309 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 KLHL31Q9H511 634 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 IGFLR1Q9H665 355 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 RIIAD1A6NNX1 92 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 NRG2O14511 850 aaPredicted RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 GYPBP06028 91 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 DDOSTP39656 456 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ATP12AP54707 1039 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ERVFC1P60507 584 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 GPR50Q13585 617 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 UBE2Q1Q7Z7E8 422 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ADGRF3Q8IZF5 1079 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ACBD7Q8N6N7 88 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ACOT4Q8N9L9 421 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 AKAP1Q92667 903 aaKnown RBP eCLIP11.16□□□□□ -0.62
MSH6-204ENST00000445503 RFT1Q96AA3 541 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 CLIP3Q96DZ5 547 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 LRIG1Q96JA1 1093 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 AMDHD1Q96NU7 426 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 CHST8Q9H2A9 424 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 FZD3Q9NPG1 666 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 BRD7Q9NPI1 651 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 EIF3KQ9UBQ5 218 aaKnown RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 PPIL1Q9Y3C6 166 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 EDDM13A0A1B0GTR0 161 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 ZSCAN5BA6NJL1 495 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 HRO43593 1189 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 VEGFDO43915 354 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 PIPP12273 146 aaPredicted RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 UQCRC1P31930 480 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 RFX2P48378 723 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 PCBP3P57721 371 aaKnown RBP11.16□□□□□ -0.62
MSH6-204ENST00000445503 RGS1Q08116 209 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 DEFB134Q4QY38 66 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 NKAIN4Q8IVV8 208 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 IZUMO1Q8IYV9 350 aa11.16□□□□□ -0.62
MSH6-204ENST00000445503 TOMM5Q8N4H5 51 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms