RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TRIM8Q9BZR9 551 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 LIPT1Q9Y234 373 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 L3MBTL1Q9Y468 752 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 PCDHGA9Q9Y5G4 932 aaKnown RBP14.57□□□□□ -0.08
USP40-206ENST00000443711 KCNE3Q9Y6H6 103 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 CNTRLQ7Z7A1 2325 aa14.57□□□□□ -0.08
USP40-206ENST00000443711 TMEM247A6NEH6 219 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 TNFRSF21O75509 655 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 REM1O75628 298 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 ABCD3P28288 659 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 TMED10P49755 219 aaKnown RBP14.56□□□□□ -0.08
USP40-206ENST00000443711 PSMD4P55036 377 aaKnown RBP14.56□□□□□ -0.08
USP40-206ENST00000443711 ARHGAP11BQ3KRB8 267 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 GCNT6Q5T4J0 391 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 RINLQ6ZS11 566 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 CCDC121Q6ZUS5 278 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 GPALPP1Q8IXQ4 340 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 SLC15A3Q8IY34 581 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 DND1Q8IYX4 353 aaKnown RBP14.56□□□□□ -0.08
USP40-206ENST00000443711 PRR22Q8IZ63 422 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 BEST3Q8N1M1 668 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 BCORP1Q8N888 145 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 RBM15BQ8NDT2 890 aaKnown RBP14.56□□□□□ -0.08
USP40-206ENST00000443711 CHDHQ8NE62 594 aaPredicted RBP14.56□□□□□ -0.08
USP40-206ENST00000443711 OR4N2Q8NGD1 307 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 OR10A6Q8NH74 314 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 TMBIM1Q969X1 311 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 OMA1Q96E52 524 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 SMAD5Q99717 465 aaKnown RBP14.56□□□□□ -0.08
USP40-206ENST00000443711 G6PC3Q9BUM1 346 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 C1orf21Q9H246 121 aa14.56□□□□□ -0.08
USP40-206ENST00000443711 KAT8Q9H7Z6 458 aaKnown RBP14.56□□□□□ -0.08
USP40-206ENST00000443711 EXPH5Q8NEV8 1989 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 ZNF354AO60765 605 aaPredicted RBP14.55□□□□□ -0.08
USP40-206ENST00000443711 PPM1BO75688 479 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 KCNK2O95069 426 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 FBXO45P0C2W1 286 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 IL12BP29460 328 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 CPOXP36551 454 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 CASRP41180 1078 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 SOX3P41225 446 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 HLCSP50747 726 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 RASSF2P50749 326 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 SLC7A2P52569 658 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 PNLIPRP2P54317 469 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 POLE2P56282 527 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 GNA13Q14344 377 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 ST3GAL2Q16842 350 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 CYP51A1Q16850 503 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 DCST2Q5T1A1 773 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 HEPHL1Q6MZM0 1159 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 C19orf48Q6RUI8 117 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 LYPD8Q6UX82 237 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 SERPINA11Q86U17 422 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 DEFB107AQ8IZN7 70 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 FAM110BQ8TC76 370 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 CRELD1Q96HD1 420 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 ARHGAP9Q9BRR9 750 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 UTP23Q9BRU9 249 aaKnown RBP14.55□□□□□ -0.08
USP40-206ENST00000443711 SPATA9Q9BWV2 254 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 RNF32Q9H0A6 362 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 ZBTB20Q9HC78 741 aaPredicted RBP14.55□□□□□ -0.08
USP40-206ENST00000443711 A4GALTQ9NPC4 353 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 SPAG4Q9NPE6 437 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 CMTM6Q9NX76 183 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 TAS2R1Q9NYW7 299 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 ADA2Q9NZK5 511 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 P2RX2Q9UBL9 471 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 PCDHGB7Q9Y5F8 929 aa14.55□□□□□ -0.08
USP40-206ENST00000443711 ASPMQ8IZT6 3477 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 TSPAN2O60636 221 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 ABCB7O75027 752 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 OR6B1O95007 311 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 IL33O95760 270 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 WDPCPO95876 746 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 NUDT7P0C024 238 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 TFPTP0C1Z6 253 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 NR2F1P10589 423 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 ATP6V1C1P21283 382 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 LCN1P31025 176 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 RFX3P48380 749 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 CYB561P49447 251 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 EEFSECP57772 596 aaKnown RBP14.54□□□□□ -0.08
USP40-206ENST00000443711 RHDQ02161 417 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 OC90Q02509 493 aaPredicted RBP14.54□□□□□ -0.08
USP40-206ENST00000443711 EFR3AQ14156 821 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.54□□□□□ -0.08
USP40-206ENST00000443711 ZNF630Q2M218 657 aaPredicted RBP14.54□□□□□ -0.08
USP40-206ENST00000443711 ZNF791Q3KP31 576 aaPredicted RBP14.54□□□□□ -0.08
USP40-206ENST00000443711 GPAT3Q53EU6 434 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 FIGNL1Q6PIW4 674 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 IGFL2Q6UWQ7 119 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 IL20RBQ6UXL0 311 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 NUP54Q7Z3B4 507 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 NET1Q7Z628 596 aaPredicted RBP14.54□□□□□ -0.08
USP40-206ENST00000443711 CALHM3Q86XJ0 350 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 C10orf111Q8N326 155 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 METTL25Q8N6Q8 603 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 TM9SF4Q92544 642 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 DIO2Q92813 273 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms