RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 SLC28A3Q9HAS3 691 aa12.58□□□□□ -0.4
USP42-203ENST00000426246 MBNL1Q9NR56 388 aaKnown RBP12.58□□□□□ -0.4
USP42-203ENST00000426246 ASIC5Q9NY37 505 aa12.58□□□□□ -0.4
USP42-203ENST00000426246 NLGN3Q9NZ94 848 aa12.58□□□□□ -0.4
USP42-203ENST00000426246 MSRAQ9UJ68 235 aa12.58□□□□□ -0.4
USP42-203ENST00000426246 GPR55Q9Y2T6 319 aaPredicted RBP12.58□□□□□ -0.4
USP42-203ENST00000426246 COL4A2P08572 1712 aa12.58□□□□□ -0.4
USP42-203ENST00000426246 LOC105369274A0A096LPK9 316 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 LDB3O75112 727 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 IL1RNP18510 177 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 OPRD1P41143 372 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 RAB15P59190 212 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 SDE2Q6IQ49 451 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 OR4N4Q8N0Y3 316 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 ASCC1Q8N9N2 400 aaKnown RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 OR8H1Q8NGG4 311 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 WFIKKN2Q8TEU8 576 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 PIK3R3Q92569 461 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 UFD1Q92890 307 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 UBE2E3Q969T4 207 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 RGMAQ96B86 450 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 TMCO6Q96DC7 493 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 BTBD2Q9BX70 525 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 GPR174Q9BXC1 333 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 ZDHHC5Q9C0B5 715 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 MRPS30Q9NP92 439 aaKnown RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 ANKRD61A6NGH8 418 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 TPD52L2O43399 206 aaKnown RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 DNAJB5O75953 348 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 NFATC1O95644 943 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 NAA10P41227 235 aaPredicted RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 DLX2Q07687 328 aaPredicted RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 ZNF234Q14588 700 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 LARS2Q15031 903 aaKnown RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 KLHDC8AQ8IYD2 350 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 SAMD12Q8N8I0 201 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 GATSQ8NAP1 163 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 GCDHQ92947 438 aaPredicted RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 FRMD6Q96NE9 622 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 MYADMQ96S97 322 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 DCLRE1CQ96SD1 692 aaKnown RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 MCHR1Q99705 422 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 KLHL28Q9NXS3 571 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 DKK3Q9UBP4 350 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 SPATA2Q9UM82 520 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 TDRD6O60522 2096 aaKnown RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 TMEM229AB2RXF0 380 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 SLC16A5O15375 505 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 OR5F1O95221 314 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 DDCP20711 480 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 ANKK1Q8NFD2 765 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 OR52I1Q8NGK6 324 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 IFT27Q9BW83 186 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 HOXD1Q9GZZ0 328 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 MKRN2Q9H000 416 aaKnown RBP12.57□□□□□ -0.4
USP42-203ENST00000426246 BRF2Q9HAW0 419 aa12.57□□□□□ -0.4
USP42-203ENST00000426246 NOTOA8MTQ0 251 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 QSOX1O00391 747 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 BTN3A3O00478 584 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 EEF1E1O43324 174 aaKnown RBP12.56□□□□□ -0.4
USP42-203ENST00000426246 PTTG1O95997 202 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 ASGR2P07307 311 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 PVRP15151 417 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 NT5EP21589 574 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 SRP9P49458 86 aaKnown RBP12.56□□□□□ -0.4
USP42-203ENST00000426246 KRR1Q13601 381 aaKnown RBP12.56□□□□□ -0.4
USP42-203ENST00000426246 SMU1Q2TAY7 513 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 BTBD16Q32M84 506 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 SYT14P1Q58G82 188 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 THOC7Q6I9Y2 204 aaKnown RBP12.56□□□□□ -0.4
USP42-203ENST00000426246 SLC27A4Q6P1M0 643 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 SERPINA12Q8IW75 414 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 YAF2Q8IY57 180 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 HCAR2Q8TDS4 363 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 ASB15Q8WXK1 588 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 GABARAPL3Q9BY60 117 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 GALNT9Q9HCQ5 603 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 EXTL2Q9UBQ6 330 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 NDRG2Q9UN36 371 aaKnown RBP12.56□□□□□ -0.4
USP42-203ENST00000426246 STUB1Q9UNE7 303 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 PCDHGB1Q9Y5G3 927 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 PLXND1Q9Y4D7 1925 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 H3BQ06 376 aaPredicted RBP12.56□□□□□ -0.4
USP42-203ENST00000426246 B4GALT2O60909 372 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 PRG2P13727 222 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 HTR2BP41595 481 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 GCGRP47871 477 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 DEFB110Q30KQ9 67 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 RAB42Q8N4Z0 105 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 ZNF671Q8TAW3 534 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 PITX2Q99697 317 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 NKX3-1Q99801 234 aaPredicted RBP12.56□□□□□ -0.4
USP42-203ENST00000426246 SERHL2Q9H4I8 314 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 ATP13A2Q9NQ11 1180 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 SLC35C2Q9NQQ7 365 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 MCUBQ9NWR8 336 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 TBC1D24Q9ULP9 559 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 NAALAD2Q9Y3Q0 740 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 ZNF780BQ9Y6R6 833 aa12.56□□□□□ -0.4
USP42-203ENST00000426246 NPC1O15118 1278 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms