RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 HECTD3Q5T447 861 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SMARCD3Q6STE5 483 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 ZNF322Q6U7Q0 402 aaPredicted RBP10.06□□□□□ -0.8
USP54-204ENST00000422491 GLB1LQ6UWU2 654 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 BTN2A1Q7KYR7 527 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 DNAJB7Q7Z6W7 309 aaPredicted RBP10.06□□□□□ -0.8
USP54-204ENST00000422491 MEX3DQ86XN8 651 aaKnown RBP10.06□□□□□ -0.8
USP54-204ENST00000422491 KLBQ86Z14 1044 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 CMIPQ8IY22 773 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 APCDD1Q8J025 514 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 TOMM5Q8N4H5 51 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 LINC00471Q8N535 108 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 ASZ1Q8WWH4 475 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 MS4A4AQ96JQ5 239 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SLC38A2Q96QD8 506 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 FNDC11Q9BVV2 318 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 BTBD1Q9H0C5 482 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 TMEM168Q9H0V1 697 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 METTL17Q9H7H0 456 aaPredicted RBP10.06□□□□□ -0.8
USP54-204ENST00000422491 SLAMF7Q9NQ25 335 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 IFT46Q9NQC8 304 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SEC14L3Q9UDX4 400 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 GLS2Q9UI32 602 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 LIPT1Q9Y234 373 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 RASD1Q9Y272 281 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 EXOGQ9Y2C4 368 aaKnown RBP10.06□□□□□ -0.8
USP54-204ENST00000422491 ANKDD1BA6NHY2 528 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 KRBOX1C9JBD0 128 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 HMGN4O00479 90 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 RNF13O43567 381 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SSNA1O43805 119 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SLC28A2O43868 658 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 ZNF821O75541 412 aaPredicted RBP10.06□□□□□ -0.8
USP54-204ENST00000422491 DDNO94850 711 aaPredicted RBP10.06□□□□□ -0.8
USP54-204ENST00000422491 KLK1P06870 262 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 CD3GP09693 182 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 GSTM3P21266 225 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 AADACL4Q5VUY2 407 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 CXCL17Q6UXB2 119 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 TBC1D19Q8N5T2 526 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 TEX47Q8TBZ9 253 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SCRN2Q96FV2 425 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 CXorf58Q96LI9 332 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 C12orf66Q96MD2 445 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SFXN2Q96NB2 322 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 GPR62Q9BZJ7 368 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 NLGN3Q9NZ94 848 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 MARK1Q9P0L2 795 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 ACSL5Q9ULC5 683 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 SH2B3Q9UQQ2 575 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 HRH3Q9Y5N1 445 aa10.06□□□□□ -0.8
USP54-204ENST00000422491 PCP4L1A6NKN8 68 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 MMP20O60882 483 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 NMBP08949 121 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 MAPK8P45983 427 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 PNLIPRP1P54315 467 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 OR10A3P58181 314 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 DHODHQ02127 395 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 FAM110CQ1W6H9 321 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 LDLRAD1Q5T700 205 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 SFXN4Q6P4A7 337 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 C3P1Q6ZMU1 363 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 ASPGQ86U10 573 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 ZNF527Q8NB42 609 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 DDOQ99489 341 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 TREX2Q9BQ50 279 aaPredicted RBP10.05□□□□□ -0.8
USP54-204ENST00000422491 BRD7Q9NPI1 651 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 PTGFRNQ9P2B2 879 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 FAM8A1Q9UBU6 413 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 SIRT4Q9Y6E7 314 aaPredicted RBP10.05□□□□□ -0.8
USP54-204ENST00000422491 A0A0G2JK05 382 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 PRAMEF27A3QJZ7 478 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 FZD7O75084 574 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 RGS11O94810 467 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 WDPCPO95876 746 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 EPPINO95925 133 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 ANKRD34CP0C6C1 535 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 ACP5P13686 325 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 SHC1P29353 583 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 SERPINA4P29622 427 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 BLVRAP53004 296 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 TSPAN5P62079 268 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 SLBPQ14493 270 aaKnown RBP eCLIP10.05□□□□□ -0.8
USP54-204ENST00000422491 MORN1Q5T089 497 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 LRFN4Q6PJG9 635 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 TTLQ8NG68 377 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 OR56B4Q8NH76 319 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 LILRB1Q8NHL6 650 aaPredicted RBP10.05□□□□□ -0.8
USP54-204ENST00000422491 RPLP0P6Q8NHW5 317 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 BRI3BPQ8WY22 251 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 TMEM169Q96HH4 297 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 ZNF607Q96SK3 696 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 DPYSL5Q9BPU6 564 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 JAM3Q9BX67 310 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 SERHL2Q9H4I8 314 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 ISG20L2Q9H9L3 353 aaKnown RBP10.05□□□□□ -0.8
USP54-204ENST00000422491 MCCC2Q9HCC0 563 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 MIEF1Q9NQG6 463 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 RNF181Q9P0P0 153 aa10.05□□□□□ -0.8
USP54-204ENST00000422491 SESN1Q9Y6P5 492 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms