RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 MS4A6EQ96DS6 147 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 FNDC11Q9BVV2 318 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 ACOXLQ9NUZ1 547 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CXXC1Q9P0U4 656 aaPredicted RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 APOBEC3BQ9UH17 382 aaKnown RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 CBLCQ9ULV8 474 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 OR1A2Q9Y585 309 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 IGLON5A6NGN9 336 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 AKR7A2O43488 359 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 VEGFDO43915 354 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 PCCBP05166 539 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 NR2F1P10589 423 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 SDHBP21912 280 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 ALAS2P22557 587 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 GABRA5P31644 462 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CTBP2P56545 445 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 STXBP1P61764 594 aaKnown RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 HTRA4P83105 476 aaPredicted RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 CD83Q01151 205 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 RAB40BQ12829 278 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 COX10Q12887 443 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 ZNF791Q3KP31 576 aaPredicted RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 AMZ2Q86W34 360 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 NUDT13Q86X67 352 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 PRUNE2Q8WUY3 3088 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 RGMAQ96B86 450 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CFAP54Q96N23 3096 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 ZNF607Q96SK3 696 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 RNF121Q9H920 327 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 SPHK1Q9NYA1 384 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 TRPC4Q9UBN4 977 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 AIFM1O95831 613 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CCL5P13501 91 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 IL9P15248 144 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 MYL9P24844 172 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 THBS2P35442 1172 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 BUD31P41223 144 aaPredicted RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 IL12RB1P42701 662 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 MTNR1AP48039 350 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 CSTF1Q05048 431 aaKnown RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 KRR1Q13601 381 aaKnown RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 FAM111BQ6SJ93 734 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 ADAMTSL4Q6UY14 1074 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 HSDL2Q6YN16 418 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 SZRD1Q7Z422 152 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 NOXA1Q86UR1 476 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 DTX3Q8N9I9 347 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 UBASH3BQ8TF42 649 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 TMEM255BQ8WV15 326 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 JPH3Q8WXH2 748 aaPredicted RBP9.24□□□□□ -0.93
SS18-203ENST00000415083 C1GALT1C1Q96EU7 318 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 FCRL4Q96PJ5 515 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 OR7D2Q96RA2 312 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 AIF1LQ9BQI0 150 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 NT5DC2Q9H857 520 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 COMMD3Q9UBI1 195 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 ALG5Q9Y673 324 aa9.24□□□□□ -0.93
SS18-203ENST00000415083 LZTS3O60299 673 aaPredicted RBP9.23□□□□□ -0.93
SS18-203ENST00000415083 PDE9AO76083 593 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 LYPD3O95274 346 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 IGHA1P01876 353 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 ACADMP11310 421 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 DDX6P26196 483 aaKnown RBP eCLIP9.23□□□□□ -0.93
SS18-203ENST00000415083 BTCP35070 178 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 PPM1AP35813 382 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 GPR4P46093 362 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 AVPR1BP47901 424 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 EVX1P49640 407 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CLCNKAP51800 687 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 PDX1P52945 283 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 GPLD1P80108 840 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CAMK2BQ13554 666 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 AGERQ15109 404 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 DUSP6Q16828 381 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CCDC58Q4VC31 144 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CACUL1Q86Y37 369 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 REM2Q8IYK8 340 aaPredicted RBP9.23□□□□□ -0.93
SS18-203ENST00000415083 ZNF557Q8N988 423 aaPredicted RBP9.23□□□□□ -0.93
SS18-203ENST00000415083 SMAP2Q8WU79 429 aaPredicted RBP9.23□□□□□ -0.93
SS18-203ENST00000415083 HSD17B8Q92506 261 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 KISS1RQ969F8 398 aaPredicted RBP9.23□□□□□ -0.93
SS18-203ENST00000415083 PPP1R16AQ96I34 528 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 KCTD7Q96MP8 289 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 TMED9Q9BVK6 235 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 TRMT61BQ9BVS5 477 aaKnown RBP9.23□□□□□ -0.93
SS18-203ENST00000415083 EXOGQ9Y2C4 368 aaKnown RBP9.23□□□□□ -0.93
SS18-203ENST00000415083 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.23□□□□□ -0.93
SS18-203ENST00000415083 TRDV1A0A1B0GX56 115 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CD8B2A6NJW9 211 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 FAM183AA6NL82 134 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 GABRPO00591 440 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 SCAMP1O15126 338 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 PRNPP04156 253 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 TRAPPC2P0DI81 140 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 TRAPPC2BP0DI82 140 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CD8BP10966 210 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 CERS1P27544 350 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 NNMTP40261 264 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 MC3RP41968 323 aa9.23□□□□□ -0.93
SS18-203ENST00000415083 RNF144AP50876 292 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms