RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DECR1Q16698 335 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 CMPK2Q5EBM0 449 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 EXOSC6Q5RKV6 272 aaKnown RBP19.91■□□□□ 0.78
CLN3-207ENST00000395653 BICRALQ6AI39 1079 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 DESI1Q6ICB0 168 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 CLECL1Q8IZS7 167 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 TMEM251Q8N6I4 163 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 ZNF597Q96LX8 424 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 CCDC28BQ9BUN5 200 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 SDR39U1Q9NRG7 319 aaPredicted RBP19.91■□□□□ 0.78
CLN3-207ENST00000395653 FAM120CQ9NX05 1096 aaKnown RBP19.91■□□□□ 0.78
CLN3-207ENST00000395653 ZIM2Q9NZV7 527 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 MRTO4Q9UKD2 239 aaKnown RBP19.91■□□□□ 0.78
CLN3-207ENST00000395653 PCDHGB4Q9UN71 923 aa19.91■□□□□ 0.78
CLN3-207ENST00000395653 EML6Q6ZMW3 1958 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 CLEC18AA5D8T8 446 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 LRRC3CA6NJW4 275 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 FAM166BA8MTA8 275 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 EDF1O60869 148 aaKnown RBP19.9■□□□□ 0.78
CLN3-207ENST00000395653 HMGN2P05204 90 aaKnown RBP19.9■□□□□ 0.78
CLN3-207ENST00000395653 S100A3P33764 101 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 GABRA3P34903 492 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 PSMD4P55036 377 aaKnown RBP19.9■□□□□ 0.78
CLN3-207ENST00000395653 SPDYE7PQ495Y7 208 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 SLC30A6Q6NXT4 461 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 CLEC18BQ6UXF7 455 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 PACS2Q86VP3 889 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 FAM109AQ8N4B1 249 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 CLEC18CQ8NCF0 446 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 OR52N2Q8NGI0 321 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 GPR151Q8TDV0 419 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 STON2Q8WXE9 905 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 SLC9A6Q92581 669 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 EFHD2Q96C19 240 aaPredicted RBP19.9■□□□□ 0.78
CLN3-207ENST00000395653 MARK4Q96L34 752 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 ZBTB18Q99592 522 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 OSBPL11Q9BXB4 747 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 ZNF703Q9H7S9 590 aaPredicted RBP19.9■□□□□ 0.78
CLN3-207ENST00000395653 PLSCR2Q9NRY7 297 aa19.9■□□□□ 0.78
CLN3-207ENST00000395653 PRAMEF25A6NGN4 478 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 KCNH1O95259 989 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 IL33O95760 270 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 ACP2P11117 423 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 IL12AP29459 219 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 TP53BP2Q13625 1128 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.89■□□□□ 0.77
CLN3-207ENST00000395653 BHLHB9Q6PI77 547 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 SLC16A11Q8NCK7 471 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 TMEM41AQ96HV5 264 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 EBF4Q9BQW3 602 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 GPATCH2Q9NW75 528 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 GIN1Q9NXP7 522 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 KLRF1Q9NZS2 232 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 B4GALT7Q9UBV7 327 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 OSGIN2Q9Y236 505 aa19.89■□□□□ 0.77
CLN3-207ENST00000395653 SLC22A3O75751 556 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 PGRP06401 933 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 KRT16P08779 473 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 STSP08842 583 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 ALOX5P09917 674 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 SOAT1P35610 550 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 PTGDSP41222 190 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 MAGEA5P43359 124 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 MASP1P48740 699 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 MRPL19P49406 292 aaKnown RBP19.88■□□□□ 0.77
CLN3-207ENST00000395653 LASP1Q14847 261 aaKnown RBP19.88■□□□□ 0.77
CLN3-207ENST00000395653 DUSP5Q16690 384 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 ANKRD46Q86W74 232 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 FAM26EQ8N5C1 309 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 OR4A15Q8NGL6 344 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 RNF138Q8WVD3 245 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 PIK3R3Q92569 461 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 C16orf58Q96GQ5 468 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 STACQ99469 402 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 SIKE1Q9BRV8 207 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 ACTRT3Q9BYD9 372 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 DUSP22Q9NRW4 184 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 QPCTLQ9NXS2 382 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 BTNL2Q9UIR0 455 aa19.88■□□□□ 0.77
CLN3-207ENST00000395653 GXYLT2A0PJZ3 443 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 ICOSLGO75144 302 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 SOX30O94993 753 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 IGHG3P01860 377 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 CYP4B1P13584 511 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 ELAVL4P26378 380 aaKnown RBP19.87■□□□□ 0.77
CLN3-207ENST00000395653 DGKQP52824 942 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 SRSF1Q07955 248 aaKnown RBP eCLIP19.87■□□□□ 0.77
CLN3-207ENST00000395653 LRRC74AQ0VAA2 488 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 FNDC7Q5VTL7 733 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 CDC73Q6P1J9 531 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 PAOXQ6QHF9 649 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 CHERPQ8IWX8 916 aaKnown RBP19.87■□□□□ 0.77
CLN3-207ENST00000395653 MIER2Q8N344 545 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 OR5AK3PQ8NH89 298 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 FBXO30Q8TB52 745 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 JADE3Q92613 823 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 RMND5BQ96G75 393 aaPredicted RBP19.87■□□□□ 0.77
CLN3-207ENST00000395653 JSRP1Q96MG2 331 aaPredicted RBP19.87■□□□□ 0.77
CLN3-207ENST00000395653 CCDC115Q96NT0 180 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 DEFB127Q9H1M4 99 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms