RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 HTD2P86397 168 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 UNC50Q53HI1 259 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 OR51D1Q8NGF3 324 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 C16orf78Q8WTQ4 265 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 CNOT9Q92600 299 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 NSUN5Q96P11 429 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 FCRL3Q96P31 734 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC6A14Q9UN76 642 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 DOC2AQ14183 400 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 PLBD1Q6P4A8 553 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 DTX3Q8N9I9 347 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC7A13Q8TCU3 470 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 MS4A4EQ96PG1 132 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC2A13Q96QE2 648 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 KCNK12Q9HB15 430 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 ANKRD30BLA7E2S9 258 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 EPHA1P21709 976 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 GATMP50440 423 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 FIGLAQ6QHK4 219 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 SCAMP4Q969E2 229 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 HYLS1Q96M11 299 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 FOLR3P41439 243 aa12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 SHC2P98077 582 aa12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 TMEM201Q5SNT2 666 aa12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 PNCKQ6P2M8 343 aa12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 KLHDC8AQ8IYD2 350 aa12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 CHDHQ8NE62 594 aaPredicted RBP12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 ARL11Q969Q4 196 aa12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 RAB39BQ96DA2 213 aa12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 FBRSL1Q9HCM7 1045 aaKnown RBP12.15□□□□□ -0.47
CCDC88C-204ENST00000389857 MYH15Q9Y2K3 1946 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 PHLPP1O60346 1717 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 CENPBD1B2RD01 187 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 GJB5O95377 273 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 RAB3AP20336 220 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 BLOC1S3Q6QNY0 202 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF852Q6ZMS4 543 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 OR4K13Q8NH42 304 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ARL5BQ96KC2 179 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF160Q9HCG1 818 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 SDHAF2Q9NX18 166 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ASB4Q9Y574 426 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 HCRTO43612 131 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 APOC3P02656 99 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 UGT2B7P16662 529 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 NTSR1P30989 418 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF529Q6P280 563 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 UMODL1-AS1Q8N2C9 162 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 DCUN1D4Q92564 292 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 TBC1D20Q96BZ9 403 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 LPAR4Q99677 370 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 PLEKHJ1Q9NW61 149 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ERVK13-1Q9NX77 482 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 SDHDO14521 159 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 GLSO94925 669 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ADAP00813 363 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 SYT14Q8NB59 555 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 OR7G2Q8NG99 324 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 LATO43561 262 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 PAHP00439 452 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ALDOAP04075 364 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 CD79AP11912 226 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 FXYD4P59646 89 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 C1orf61Q13536 156 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 CNN3Q15417 329 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 CTU1Q7Z7A3 348 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 OR52N2Q8NGI0 321 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 A0A087WUU8 490 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 A0A1B0GV50 99 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 C1orf196B1AJZ1 125 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 KIAA0355O15063 1070 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 S1PR4O95977 384 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 LCATP04180 440 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 RPS26P62854 115 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 COQ5Q5HYK3 327 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 PRAMEF8Q5VWM4 474 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 PRAMEF7Q5VXH5 474 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 COMMD7Q86VX2 200 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 IGDCC3Q8IVU1 814 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 OR8K5Q8NH50 307 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 TEPSINQ96N21 525 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 RBM24Q9BX46 236 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 HAO2Q9NYQ3 351 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 LSM5Q9Y4Y9 91 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 COL14A1Q05707 1796 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 POLR1CO15160 346 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 PPP1R3DO95685 299 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 GGT1P19440 569 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 NKX6-1P78426 367 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF33BQ06732 778 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 PCGF3Q3KNV8 242 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 HMGN2P46Q86SG4 172 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 PSAT1Q9Y617 370 aa12.14□□□□□ -0.47
CCDC88C-204ENST00000389857 LOC102725191A0A1B0GVB3 256 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 FAM230AA0A1W2PPH8 454 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 EPHA4P54764 986 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 FGL2Q14314 439 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 RTL6Q6ICC9 239 aa12.13□□□□□ -0.47
CCDC88C-204ENST00000389857 RABEPKQ7Z6M1 372 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms