RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SELENOWP63302 87 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 ROR2Q01974 943 aaKnown RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 EEF1A2Q05639 463 aaKnown RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 SLAMF1Q13291 335 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 IL18R1Q13478 541 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 ELOAQ14241 798 aaKnown RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 LAPTM4AQ15012 233 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 ZNF630Q2M218 657 aaPredicted RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 RBM48Q5RL73 367 aaKnown RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 CCDC80Q76M96 950 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 PRSS41Q7RTY9 318 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 CYP4Z1Q86W10 505 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 ZC3H7AQ8IWR0 971 aaKnown RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 ALDH16A1Q8IZ83 802 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 CA13Q8N1Q1 262 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 NFKBIDQ8NI38 313 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 METTL21AQ8WXB1 218 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 OR5P2Q8WZ92 322 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 HDAC2Q92769 488 aaKnown RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 YIPF2Q9BWQ6 316 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 CXorf36Q9H7Y0 433 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 DDX18Q9NVP1 670 aaKnown RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 CTSFQ9UBX1 484 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 C19orf25Q9UFG5 118 aaPredicted RBP9.51□□□□□ -0.89
VPS53-202ENST00000389040 SNX8Q9Y5X2 465 aa9.51□□□□□ -0.89
VPS53-202ENST00000389040 IDSB3KWA1 339 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 PROM1O43490 865 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 TMPRSS11DO60235 418 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ITGB2P05107 769 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 HEXBP07686 556 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ICAM2P13598 275 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 CDK9P50750 372 aaKnown RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 DAPP51397 102 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 RRADP55042 308 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 CDK6Q00534 326 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 LSAMPQ13449 338 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 RUNX2Q13950 521 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 SERTAD2Q14140 314 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ZBED5Q49AG3 693 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 IQCCQ4KMZ1 466 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 VWA2Q5GFL6 755 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ZNF691Q5VV52 312 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 KDM4DQ6B0I6 523 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 FAM180BQ6P0A1 224 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ZNF773Q6PK81 442 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ZNF793Q6ZN11 406 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 SAMD14Q8IZD0 417 aaPredicted RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 METTL27Q8N6F8 245 aaPredicted RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 PIK3C3Q8NEB9 887 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ADAMTS17Q8TE56 1095 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 LZICQ8WZA0 190 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 TAMM41Q96BW9 452 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ZNF764Q96H86 408 aaPredicted RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 FER1L6-AS2Q96M78 137 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 CNTNAP3BQ96NU0 1288 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 EPYCQ99645 322 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 CRB3Q9BUF7 120 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 FAIM2Q9BWQ8 316 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 CNTNAP3Q9BZ76 1288 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ADNPQ9H2P0 1102 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 EPS8L2Q9H6S3 715 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 NEUROD4Q9HD90 331 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 SLAMF7Q9NQ25 335 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 THUMPD1Q9NXG2 353 aaKnown RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 PDP1Q9P0J1 537 aaPredicted RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 IL17BQ9UHF5 180 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 PSME2Q9UL46 239 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 MKL2Q9ULH7 1088 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ASB4Q9Y574 426 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 AHCTF1Q8WYP5 2266 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 LOC102723996A0A087X1L8 192 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 C4orf51C9J302 202 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 PEX12O00623 359 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 BCKDKO14874 412 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 CTNSO60931 367 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 MITFO75030 526 aaPredicted RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 CNOT3O75175 753 aaKnown RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 SNRNP200O75643 2136 aaKnown RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 OPN1SWP03999 348 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 UMODP07911 640 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 C8orf89P0DMQ9 161 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 ARAFP10398 606 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 DRD2P14416 443 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 IL7RP16871 459 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 CRHBPP24387 322 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 EEF1B2P24534 225 aaKnown RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 CERS1P27544 350 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 MANFP55145 182 aaKnown RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 ISL1P61371 349 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 TMEM205Q6UW68 189 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 KCTD8Q6ZWB6 473 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 GALNT5Q7Z7M9 940 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 VASH2Q86V25 355 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 SLC30A8Q8IWU4 369 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 CHDHQ8NE62 594 aaPredicted RBP9.5□□□□□ -0.89
VPS53-202ENST00000389040 OR5T3Q8NGG3 340 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 SPPL2AQ8TCT8 520 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 NEURL3Q96EH8 262 aa9.5□□□□□ -0.89
VPS53-202ENST00000389040 PEX11GQ96HA9 241 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms