RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ZNF267Q14586 743 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-202ENST00000372405 SEC23BQ15437 767 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 MAPK14Q16539 360 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 COLEC12Q5KU26 742 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 C1orf189Q5VU69 101 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 LAIR2Q6ISS4 152 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 TTC33Q6PID6 262 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-202ENST00000372405 ZC3H14Q6PJT7 736 aaKnown RBP12.82□□□□□ -0.36
PTPRF-202ENST00000372405 ZAR1Q86SH2 424 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 COX18Q8N8Q8 333 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF555Q8NEP9 628 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 OR52P1PQ8NH57 321 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 GPR151Q8TDV0 419 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 PHF10Q8WUB8 498 aaKnown RBP12.82□□□□□ -0.36
PTPRF-202ENST00000372405 TSLPQ969D9 159 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 CCDC74BQ96LY2 380 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 ALPK1Q96QP1 1244 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 OR1F2PQ96R84 312 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 ARHGDIGQ99819 225 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 PSD2Q9BQI7 771 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 FUZQ9BT04 418 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 PRR14Q9BWN1 585 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 SAP130Q9H0E3 1048 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 MTHFD2LQ9H903 347 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-202ENST00000372405 FOLH1BQ9HBA9 442 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 ORC6Q9Y5N6 252 aa12.82□□□□□ -0.36
PTPRF-202ENST00000372405 HEMK1Q9Y5R4 338 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-202ENST00000372405 IGKV3D-11A0A0A0MRZ8 115 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 A0A1B0GX78 115 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 COQ9O75208 318 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 TIAF1O95411 115 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 TFAP2AP05549 437 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 RPS4Y1P22090 263 aaKnown RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ELAVL4P26378 380 aaKnown RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ELK4P28324 431 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 PRKAR1BP31321 381 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 CDH15P55291 814 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 FUT7Q11130 342 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 RAPSNQ13702 412 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 CTU2Q2VPK5 515 aaKnown RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 VWA2Q5GFL6 755 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF691Q5VV52 312 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 FOXB2Q5VYV0 432 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 FIGNL1Q6PIW4 674 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 DHRS4L2Q6PKH6 230 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 PRR23CQ6ZRP0 262 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 SLC38A9Q8NBW4 561 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 VSTM2LQ96N03 204 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 PTCHD1Q96NR3 888 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 LMF2Q9BU23 707 aaKnown RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 YIPF2Q9BWQ6 316 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 SYNDIG1Q9H7V2 258 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF304Q9HCX3 659 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 SLC22A11Q9NSA0 550 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 MAN2C1Q9NTJ4 1040 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ERVK-19Q9WJR5 959 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF443Q9Y2A4 671 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 SLC9A8Q9Y2E8 581 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 NPIPA5A0A0B4J1W7 369 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 AGAP5A6NIR3 686 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 NPIPA7E9PJI5 369 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 BCKDKO14874 412 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 SYPP08247 313 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 NPIPA8P0DM63 369 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ATP6V1B1P15313 513 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 CBLP22681 906 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 MPLP40238 635 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 PGDP52209 483 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ISL1P61371 349 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 GPR68Q15743 365 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 NPSR1Q6W5P4 371 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 THAP5Q7Z6K1 395 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 CCDC71Q8IV32 467 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 TMEM151BQ8IW70 566 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 C8orf59Q8N0T1 100 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF615Q8N8J6 731 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 OR4N2Q8NGD1 307 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 CNDP2Q96KP4 475 aaKnown RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 DPYSL5Q9BPU6 564 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 CNPPD1Q9BV87 410 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 GABARAPL3Q9BY60 117 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 ARRDC1-AS1Q9H2J1 176 aa12.81□□□□□ -0.36
PTPRF-202ENST00000372405 NDRG4Q9ULP0 352 aaKnown RBP12.81□□□□□ -0.36
PTPRF-202ENST00000372405 PEX12O00623 359 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 KIAA0513O60268 411 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 STX11O75558 287 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 CCNB2O95067 398 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 KCNK2O95069 426 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 IGKV1D-16P01601 117 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 IFNA16P05015 189 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 H1F0P07305 194 aaKnown RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 FBLP22087 321 aaKnown RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 EEF1A1P68104 462 aaKnown RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 DAB2P98082 770 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 RHAGQ02094 409 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 CD47Q08722 323 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 NPRL3Q12980 569 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 SERTAD2Q14140 314 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 KCTD21Q4G0X4 260 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 RNF220Q5VTB9 566 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms