RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TMEM74BQ9NUR3 256 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 CNIH4Q9P003 139 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 POLR2CP19387 275 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 HNRNPA2B1P22626 353 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 OMPP47874 163 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 GAS1P54826 345 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 SIM1P81133 766 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 MLLT1Q03111 559 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 TFF2Q03403 129 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 TMEM31Q5JXX7 168 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 STEAP3Q658P3 488 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC27A4Q6P1M0 643 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 FIGLAQ6QHK4 219 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 KIAA1324Q6UXG2 1013 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 GDPGP1Q6ZNW5 385 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 TRIM69Q86WT6 500 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 CADM3Q8N126 398 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 TEX47Q8TBZ9 253 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 TMEM163Q8TC26 289 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 ASPNQ9BXN1 380 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 SEC14L4Q9UDX3 406 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 PILRAQ9UKJ1 303 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 NTNG1Q9Y2I2 539 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 WWP2O00308 870 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 TNFRSF10CO14798 259 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 MYL12BO14950 172 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 RAB36O95755 333 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 PSMA1P25786 263 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 SOX18P35713 384 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 ETV5P41161 510 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 ETV1P50549 477 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 SRP54P61011 504 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 MAP4K2Q12851 820 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 MLLT11Q13015 90 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 HTR4Q13639 388 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 AGAP7PQ5VUJ5 663 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 SAMD14Q8IZD0 417 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 OR2L13Q8N349 312 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 DNAJC5GQ8N7S2 189 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 FAM83FQ8NEG4 500 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 FAM46AQ96IP4 442 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 NUAK2Q9H093 628 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 KLHL25Q9H0H3 589 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 ANKRD19PQ9H560 264 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 MTHFD2LQ9H903 347 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 MRPS18AQ9NVS2 196 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 NDUFB11Q9NX14 153 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 KLHL28Q9NXS3 571 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 MSRAQ9UJ68 235 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 DAPP1Q9UN19 280 aa19.48■□□□□ 0.71
CCDC88B-203ENST00000359902 LOC105369274A0A096LPK9 316 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 LOC102723532A0A0G2JNH3 316 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 OR6C74A6NCV1 312 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 TTC36A6NLP5 189 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 RPS19P39019 145 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 ETV6P41212 452 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 MAGEA10P43363 369 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 C1DQ13901 141 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 GPR18Q14330 331 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 ALG11Q2TAA5 492 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 RASSF6Q6ZTQ3 369 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 NKAIN4Q8IVV8 208 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 PHC2Q8IXK0 858 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 OR4N4Q8N0Y3 316 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 OR10G6Q8NH81 332 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC9A6Q92581 669 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 TRMT61AQ96FX7 289 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 RIPOR3Q96MK2 946 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 KCNS3Q9BQ31 491 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 ACTR10Q9NZ32 417 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 GSAPA4D1B5 854 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 CTDSP2O14595 271 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 B3GALT2O43825 422 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 UBXN7O94888 489 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 THY1P04216 161 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 NDUFV2P19404 249 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 RGS8P57771 180 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC13A2Q13183 592 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 PUS10Q3MIT2 529 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 KLHL22Q53GT1 634 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 USP53Q70EK8 1073 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 RRM2BQ7LG56 351 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 STUB1Q9UNE7 303 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 ZNF443Q9Y2A4 671 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 GPR52Q9Y2T5 361 aa19.47■□□□□ 0.71
CCDC88B-203ENST00000359902 A0A075B6Q4 140 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 MED26O95402 600 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 AGR2O95994 175 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 GTF2E2P29084 291 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 SEPHS1P49903 392 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 TPMTP51580 245 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 DECR1Q16698 335 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 TYW3Q6IPR3 259 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 TMEM92Q6UXU6 159 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 CCDC190Q86UF4 302 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 PIGXQ8TBF5 258 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 MCHR1Q99705 422 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 TRIM45Q9H8W5 580 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 SP140LQ9H930 580 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 CARD8Q9Y2G2 431 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms