RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 COQ9O75208 318 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 SLITRK5O94991 958 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 ELAVL4P26378 380 aaKnown RBP16.76■□□□□ 0.27
CLN3-202ENST00000355477 PNLIPRP2P54317 469 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 HSPB3Q12988 150 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 PDE7AQ13946 482 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 XKR7Q5GH72 579 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 WIPI1Q5MNZ9 446 aaPredicted RBP16.76■□□□□ 0.27
CLN3-202ENST00000355477 VASNQ6EMK4 673 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 YRDCQ86U90 279 aaKnown RBP16.76■□□□□ 0.27
CLN3-202ENST00000355477 NUDCD3Q8IVD9 361 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 ULK2Q8IYT8 1036 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 FAM83FQ8NEG4 500 aaPredicted RBP16.76■□□□□ 0.27
CLN3-202ENST00000355477 TMCO6Q96DC7 493 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 ZNF764Q96H86 408 aaPredicted RBP16.76■□□□□ 0.27
CLN3-202ENST00000355477 ZNF395Q9H8N7 513 aaPredicted RBP16.76■□□□□ 0.27
CLN3-202ENST00000355477 SERHLQ9NQF3 203 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 DDX18Q9NVP1 670 aaKnown RBP16.76■□□□□ 0.27
CLN3-202ENST00000355477 Q9UFV3 132 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 TMED5Q9Y3A6 229 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 OR10H1Q9Y4A9 318 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 PCDHGB3Q9Y5G1 929 aa16.76■□□□□ 0.27
CLN3-202ENST00000355477 WDR91A4D1P6 747 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 FAM90A27PA6NNH2 459 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 C17orf51A8MQB3 221 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 B4DXG7 233 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 ITM2AO43736 263 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 TBX19O60806 448 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 ABCB7O75027 752 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 PEX11AO75192 247 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 LYPLA1O75608 230 aaPredicted RBP16.75■□□□□ 0.27
CLN3-202ENST00000355477 TOXO94900 526 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 HOXD4P09016 255 aaPredicted RBP16.75■□□□□ 0.27
CLN3-202ENST00000355477 GABRA1P14867 456 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 BMP7P18075 431 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 IL12BP29460 328 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 SERPINB5P36952 375 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 SERPINB4P48594 390 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 TFF3Q07654 80 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 GAB1Q13480 694 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 EFR3AQ14156 821 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 TNFAIP8L3Q5GJ75 292 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 DCST1Q5T197 706 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 SEM1Q6ZVN7 128 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 LIX1LQ8IVB5 337 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 ZNF295-AS1Q8N0V1 137 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 ACBD4Q8NC06 268 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 RNF138Q8WVD3 245 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 PPCDCQ96CD2 204 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 ZIM3Q96PE6 472 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 UGT2B28Q9BY64 529 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 TRIM8Q9BZR9 551 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 ENKD1Q9H0I2 346 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 RUBCNLQ9H714 662 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 SH3BP4Q9P0V3 963 aa16.75■□□□□ 0.27
CLN3-202ENST00000355477 SKAP2O75563 359 aaPredicted RBP16.74■□□□□ 0.27
CLN3-202ENST00000355477 CBR3O75828 277 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 CYP4B1P13584 511 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 EFNA1P20827 205 aaPredicted RBP16.74■□□□□ 0.27
CLN3-202ENST00000355477 PTGER4P35408 488 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 KRT20P35900 424 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 FRKP42685 505 aaPredicted RBP16.74■□□□□ 0.27
CLN3-202ENST00000355477 GAS1P54826 345 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 PSPHP78330 225 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 MPP2Q14168 576 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 CYP27C1Q4G0S4 372 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 NHSL2Q5HYW2 709 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 C6orf136Q5SQH8 315 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 CEP85LQ5SZL2 805 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 OR5M10Q6IEU7 315 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 MED12LQ86YW9 2145 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 HOMEZQ8IX15 550 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 NUDT8Q8WV74 236 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 PPP3R2Q96LZ3 170 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 SPOCK3Q9BQ16 436 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 LMF2Q9BU23 707 aaKnown RBP16.74■□□□□ 0.27
CLN3-202ENST00000355477 PRDM14Q9GZV8 571 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 CENPHQ9H3R5 247 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 KCNJ16Q9NPI9 418 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 NPDC1Q9NQX5 325 aaPredicted RBP16.74■□□□□ 0.27
CLN3-202ENST00000355477 FLRT3Q9NZU0 649 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 FBXL2Q9UKC9 423 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 CBLCQ9ULV8 474 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 WIF1Q9Y5W5 379 aa16.74■□□□□ 0.27
CLN3-202ENST00000355477 AHRRA9YTQ3 701 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 IFI6P09912 130 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 ASMTP46597 345 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 ZFP36L2P47974 494 aaKnown RBP16.73■□□□□ 0.27
CLN3-202ENST00000355477 MANFP55145 182 aaKnown RBP16.73■□□□□ 0.27
CLN3-202ENST00000355477 WNT3P56703 355 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 ACSF3Q4G176 576 aaPredicted RBP16.73■□□□□ 0.27
CLN3-202ENST00000355477 PLCZ1Q86YW0 608 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 ABTB1Q969K4 478 aaPredicted RBP16.73■□□□□ 0.27
CLN3-202ENST00000355477 WDYHV1Q96HA8 205 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 TREX2Q9BQ50 279 aaPredicted RBP16.73■□□□□ 0.27
CLN3-202ENST00000355477 C1orf50Q9BV19 199 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 C20orf27Q9GZN8 174 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 SSU72Q9NP77 194 aaKnown RBP16.73■□□□□ 0.27
CLN3-202ENST00000355477 EQTNQ9NQ60 294 aa16.73■□□□□ 0.27
CLN3-202ENST00000355477 CAMK2AQ9UQM7 478 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms