RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 RRM2BQ7LG56 351 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 GJD3Q8N144 294 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 LRRC25Q8N386 305 aaPredicted RBP20.4■□□□□ 0.86
SHMT1-202ENST00000352886 OR9Q1Q8NGQ5 310 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 OR52P1PQ8NH57 321 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 TMEM163Q8TC26 289 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 HPS1Q92902 700 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 BARHL1Q9BZE3 327 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 CD93Q9NPY3 652 aa20.4■□□□□ 0.86
SHMT1-202ENST00000352886 HYKKA2RU49 373 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 AQP9O43315 295 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 KLF8O95600 359 aaPredicted RBP20.39■□□□□ 0.86
SHMT1-202ENST00000352886 CPN2P22792 545 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 TNFRSF17Q02223 184 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 TSPAN31Q12999 210 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 SHHQ15465 462 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 FBXO42Q6P3S6 717 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 NT5CQ8TCD5 201 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 NR4A3Q92570 626 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 SMURF1Q9HCE7 757 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 KLHL28Q9NXS3 571 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 NTNG1Q9Y2I2 539 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 FANCMQ8IYD8 2048 aa20.39■□□□□ 0.86
SHMT1-202ENST00000352886 ZNF670-ZNF695F2Z2N8 137 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 UBXN7O94888 489 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 PRKAR1BP31321 381 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 NFATC4Q14934 902 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 FAM214AQ32MH5 1076 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 KLHL22Q53GT1 634 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 CLEC12AQ5QGZ9 265 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 MFSD12Q6NUT3 480 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 SLC36A4Q6YBV0 504 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 OR4N5Q8IXE1 308 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 SIMC1Q8NDZ2 872 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 CDS1Q92903 461 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 SIPA1Q96FS4 1042 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 MS4A4EQ96PG1 132 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 SLC30A2Q9BRI3 323 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 SNTG1Q9NSN8 517 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 SSR3Q9UNL2 185 aa20.39■□□□□ 0.85
SHMT1-202ENST00000352886 ARHGEF17Q96PE2 2063 aaPredicted RBP20.39■□□□□ 0.85
SHMT1-202ENST00000352886 PRODHO43272 600 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 PTTG1O95997 202 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 MYL12AP19105 171 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 OMPP47874 163 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 LBX1P52954 281 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 GAS1P54826 345 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 RGS8P57771 180 aaPredicted RBP20.38■□□□□ 0.85
SHMT1-202ENST00000352886 DEFB134Q4QY38 66 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 NKAIN4Q8IVV8 208 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 SLC22A18Q96BI1 424 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 TMEM168Q9H0V1 697 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 SACM1LQ9NTJ5 587 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 DUXAA6NLW8 204 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 RGS5O15539 181 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 P2RX6O15547 441 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 EGFP01133 1207 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 ACP2P11117 423 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 IFNA8P32881 189 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 HYAL1Q12794 435 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 HEPHL1Q6MZM0 1159 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 RASSF6Q6ZTQ3 369 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 FLVCR1-AS1Q8TAF5 88 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 RNFT2Q96EX2 444 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 WDR92Q96MX6 357 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 KCMF1Q9P0J7 381 aa20.38■□□□□ 0.85
SHMT1-202ENST00000352886 LOC110117498-PIK3R3F6TDL0 507 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 AP3D1O14617 1153 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 CTSVO60911 334 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 HOXC4P09017 264 aaPredicted RBP20.37■□□□□ 0.85
SHMT1-202ENST00000352886 TNFSF8P32971 234 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 RORCP51449 518 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 SIM1P81133 766 aaPredicted RBP20.37■□□□□ 0.85
SHMT1-202ENST00000352886 SUZ12Q15022 739 aaKnown RBP20.37■□□□□ 0.85
SHMT1-202ENST00000352886 FLYWCH1Q4VC44 716 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 PRRT3Q5FWE3 981 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 OR2G6Q5TZ20 316 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 PPP2R2DQ66LE6 453 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 TMEM184AQ6ZMB5 413 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 FRRS1Q6ZNA5 592 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 PLEKHM3Q6ZWE6 761 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 PIGXQ8TBF5 258 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 SLC38A2Q96QD8 506 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 OR2A5Q96R48 311 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 SDHCQ99643 169 aaPredicted RBP20.37■□□□□ 0.85
SHMT1-202ENST00000352886 NKX2-4Q9H2Z4 354 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 TRIM45Q9H8W5 580 aaPredicted RBP20.37■□□□□ 0.85
SHMT1-202ENST00000352886 FBRSQ9HAH7 460 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 DNAJB6O75190 326 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 KCNK2O95069 426 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 RASGRP1O95267 797 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 SPNP16150 400 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 RAB40BQ12829 278 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 C3orf38Q5JPI3 329 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 CDC73Q6P1J9 531 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 MRGPREQ86SM8 312 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 ANKK1Q8NFD2 765 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 OR4K14Q8NGD5 310 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 PIK3R3Q92569 461 aa20.37■□□□□ 0.85
SHMT1-202ENST00000352886 OR2A14Q96R47 310 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms