RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 MND1Q9BWT6 205 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 SLC28A3Q9HAS3 691 aa18.13■□□□□ 0.49
COL9A3-201ENST00000343916 LOC105369274A0A096LPK9 316 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 LOC102723532A0A0G2JNH3 316 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 FAM170BA6NMN3 283 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 CTDSP2O14595 271 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 NDUFA9Q16795 377 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 ENTPD8Q5MY95 495 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 ATAD3BQ5T9A4 648 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 LIPKQ5VXJ0 399 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 ZNF730Q6ZMV8 503 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 NKAIN4Q8IVV8 208 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 OR4N4Q8N0Y3 316 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 LRRC25Q8N386 305 aaPredicted RBP18.12■□□□□ 0.49
COL9A3-201ENST00000343916 OR52I1Q8NGK6 324 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 DIO2Q92813 273 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 S1PR5Q9H228 398 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 KCMF1Q9P0J7 381 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 A3GALT2U3KPV4 340 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 FANCMQ8IYD8 2048 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 PNMA8CA0A1B0GUJ8 204 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 UGT2B7P16662 529 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 TNFRSF17Q02223 184 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 RUNX2Q13950 521 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 SLC7A5P1Q8MH63 180 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 FRMD1Q8N878 549 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 OR52P1PQ8NH57 321 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 ARHGDIGQ99819 225 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 RERGLQ9H628 205 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 NCKAP1Q9Y2A7 1128 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 GON4LQ3T8J9 2241 aa18.12■□□□□ 0.49
COL9A3-201ENST00000343916 TAF4O00268 1085 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 MYL12BO14950 172 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 NDUFS1P28331 727 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 SOX6P35712 828 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 ETV5P41161 510 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 ETV1P50549 477 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 SMSP52788 366 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 EFNB1P98172 346 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 GPR18Q14330 331 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 CCNJQ5T5M9 372 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 MFSD12Q6NUT3 480 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 PRSS41Q7RTY9 318 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 FGF11Q92914 225 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 NUAK2Q9H093 628 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 SAP130Q9H0E3 1048 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 ITGB1BP2Q9UKP3 347 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 CFL2Q9Y281 166 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 MRPS2Q9Y399 296 aaKnown RBP18.11■□□□□ 0.49
COL9A3-201ENST00000343916 CENPVL1A0A0U1RR11 272 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 OR6C74A6NCV1 312 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 SYT5O00445 386 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 ASNA1O43681 348 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 EIF2S1P05198 315 aaKnown RBP18.11■□□□□ 0.49
COL9A3-201ENST00000343916 CCNYL3P0C7X3 344 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 PVRP15151 417 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 NDUFV2P19404 249 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 RPS19P39019 145 aaKnown RBP18.11■□□□□ 0.49
COL9A3-201ENST00000343916 TGM4P49221 684 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 PRAMEF8Q5VWM4 474 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 PRAMEF7Q5VXH5 474 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 TMEM92Q6UXU6 159 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 FRRS1Q6ZNA5 592 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 LINC00471Q8N535 108 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 TEX47Q8TBZ9 253 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 ASPNQ9BXN1 380 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 IL20RAQ9UHF4 553 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 LIPT1Q9Y234 373 aa18.11■□□□□ 0.49
COL9A3-201ENST00000343916 A6NCN8 305 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 CH25HO95992 272 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 THY1P04216 161 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 RCVRNP35243 200 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 CRYBB2P43320 205 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 RNF144AP50876 292 aaPredicted RBP18.1■□□□□ 0.49
COL9A3-201ENST00000343916 RGS8P57771 180 aaPredicted RBP18.1■□□□□ 0.49
COL9A3-201ENST00000343916 BCL2A1Q16548 175 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 FAM214AQ32MH5 1076 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 TRMT12Q53H54 448 aaKnown RBP18.1■□□□□ 0.49
COL9A3-201ENST00000343916 FCRL6Q6DN72 434 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 RRM2BQ7LG56 351 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 SHFQ7M4L6 423 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 PROKR2Q8NFJ6 384 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 SLC22A18Q96BI1 424 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 LRRTM2O43300 516 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 ALOX12P18054 663 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 GSTM3P21266 225 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 PSMA1P25786 263 aaKnown RBP18.1■□□□□ 0.49
COL9A3-201ENST00000343916 SOX18P35713 384 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 SUZ12Q15022 739 aaKnown RBP18.1■□□□□ 0.49
COL9A3-201ENST00000343916 OR2G6Q5TZ20 316 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 SLC27A4Q6P1M0 643 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 USP30Q70CQ3 517 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 OR4K14Q8NGD5 310 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 NT5CQ8TCD5 201 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 TMEM203Q969S6 136 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 MS4A4EQ96PG1 132 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 SIAEQ9HAT2 523 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 TESQ9UGI8 421 aaKnown RBP18.1■□□□□ 0.49
COL9A3-201ENST00000343916 PCOLCE2Q9UKZ9 415 aa18.1■□□□□ 0.49
COL9A3-201ENST00000343916 DAPP1Q9UN19 280 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms