RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FBXO43Q4G163 708 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 SYT14P1Q58G82 188 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 C12orf73Q69YU5 71 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 FIGNL1Q6PIW4 674 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 NRMQ8IXM6 262 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 LRRC25Q8N386 305 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 OR13H1Q8NG92 308 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 OR8D4Q8NGM9 314 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 TEX47Q8TBZ9 253 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 TMEM255BQ8WV15 326 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 FAM3CQ92520 227 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 MCHR1Q99705 422 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 CDCA4Q9BXL8 241 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 SACM1LQ9NTJ5 587 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 TBCCD1Q9NVR7 557 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ACTR10Q9NZ32 417 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 RPL36Q9Y3U8 105 aaKnown RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ARRDC5A6NEK1 342 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 OR2W5A6NFC9 320 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 CDC123O75794 336 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 DLGAP3O95886 979 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 NT5EP21589 574 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 HNRNPA2B1P22626 353 aaKnown RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 TEAD1P28347 426 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 RPS15AP62244 130 aaKnown RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 SHC2P98077 582 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 DUSP5Q16690 384 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ENTPD8Q5MY95 495 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 TMEM52Q8NDY8 209 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 OR4K14Q8NGD5 310 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 OR9Q1Q8NGQ5 310 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 GATAD2BQ8WXI9 593 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 GAL3ST3Q96A11 431 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 DHRS1Q96LJ7 313 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 CEP19Q96LK0 163 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ACTRT3Q9BYD9 372 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 SAP130Q9H0E3 1048 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 S1PR5Q9H228 398 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ZSCAN32Q9NX65 697 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 CNOT2Q9NZN8 540 aaKnown RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 B3GNT3Q9Y2A9 372 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 WDR45Q9Y484 360 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ASPMQ8IZT6 3477 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 AGAP5A6NIR3 686 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 HYAL3O43820 417 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 KDM1AO60341 852 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 AZGP1P25311 298 aaKnown RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 CSTF2P33240 577 aaKnown RBP eCLIP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 CD79BP40259 229 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ETV5P41161 510 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ETV1P50549 477 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 TUBA1BP68363 451 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 FAM214AQ32MH5 1076 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 MFSD4BQ5TF39 518 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 FCRL6Q6DN72 434 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 NIPAL1Q6NVV3 410 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 TUBA1AQ71U36 451 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 LHFPL3Q86UP9 236 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ATCAYQ86WG3 371 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 C10orf90Q96M02 699 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ZNF582Q96NG8 517 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 OR2A5Q96R48 311 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 PSD2Q9BQI7 771 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 FUZQ9BT04 418 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 PINK1Q9BXM7 581 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ASPNQ9BXN1 380 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 MROQ9BYG7 248 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 MMP27Q9H306 513 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 BCL2L10Q9HD36 194 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 EVA1BQ9NVM1 165 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 HRASLS2Q9NWW9 162 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 ERVK13-1Q9NX77 482 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 SPIN1Q9Y657 262 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-201ENST00000341247 SLCO1B1Q9Y6L6 691 aa9.68□□□□□ -0.86
LIMA1-201ENST00000341247 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 H0YGG7 62 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 AP3D1O14617 1153 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 B3GALT2O43825 422 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SLC2A10O95528 541 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 PRG2P13727 222 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SLC15A1P46059 708 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 PPP5CP53041 499 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 VSX2P58304 361 aaPredicted RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 ARF3P61204 181 aaPredicted RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SNRPGP62308 76 aaKnown RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 STEAP3Q658P3 488 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 TYW3Q6IPR3 259 aaKnown RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SMARCD3Q6STE5 483 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 TMEM64Q6YI46 380 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 PARP16Q8N5Y8 322 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 C9orf43Q8TAL5 461 aaPredicted RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 RLN3Q8WXF3 142 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 GIMAP5Q96F15 307 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 GAS2L1Q99501 681 aaPredicted RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 MARCH7Q9H992 704 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 KLF15Q9UIH9 416 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 CD207Q9UJ71 328 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 CACNA1IQ9P0X4 2223 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 FAM183AA6NL82 134 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 RPS19P39019 145 aaKnown RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms