RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 NUP210LQ5VU65 1888 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 FAM86C2PA6NEL3 165 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 HS6ST1O60243 411 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 ALBP02768 609 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 IFNA16P05015 189 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 GUSBP08236 651 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 GNAO1P09471 354 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 RPS4Y1P22090 263 aaKnown RBP14.38□□□□□ -0.11
LIMS1-202ENST00000338045 GABRA3P34903 492 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 DAPP51397 102 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF155Q12901 538 aaPredicted RBP14.38□□□□□ -0.11
LIMS1-202ENST00000338045 BLMHQ13867 455 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 VWA2Q5GFL6 755 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 PHF19Q5T6S3 580 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 PWWP2BQ6NUJ5 590 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 LACC1Q8IV20 430 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF615Q8N8J6 731 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 SLC38A9Q8NBW4 561 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 GPR151Q8TDV0 419 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 PTPMT1Q8WUK0 201 aaPredicted RBP14.38□□□□□ -0.11
LIMS1-202ENST00000338045 PIK3R3Q92569 461 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 PMM1Q92871 262 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 MBOAT4Q96T53 435 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 TOR3AQ9H497 397 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 POLE3Q9NRF9 147 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 MKLN1Q9UL63 735 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 ERVK-19Q9WJR5 959 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 SLC9A8Q9Y2E8 581 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 IFT52Q9Y366 437 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 CHST2Q9Y4C5 530 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 ASCC3Q8N3C0 2202 aaKnown RBP14.38□□□□□ -0.11
LIMS1-202ENST00000338045 TCRBV16S1A1N1A0A5B0 115 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 STX11O75558 287 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 SCRG1O75711 98 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 CLPSP04118 112 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 FGF5P12034 268 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 RAD23AP54725 363 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 CDH12P55289 794 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 MINDY4Q4G0A6 757 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF311Q5JNZ3 666 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 CCNJQ5T5M9 372 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 B3GNT8Q7Z7M8 397 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 HMGN2P46Q86SG4 172 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 VRK2Q86Y07 508 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 RBM45Q8IUH3 476 aaKnown RBP14.38□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF619Q8N2I2 560 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 OR7G1Q8NGA0 311 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 OR52P1PQ8NH57 321 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 RHBDD1Q8TEB9 315 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 C17orf50Q8WW18 174 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 CYGBQ8WWM9 190 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 TSLPQ969D9 159 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 ARHGDIGQ99819 225 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 PSD2Q9BQI7 771 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 CNPPD1Q9BV87 410 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 SLC7A5P2Q9GIP4 190 aa14.38□□□□□ -0.11
LIMS1-202ENST00000338045 AGAP5A6NIR3 686 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 C17orf105B2RV13 164 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 CDX4O14627 284 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-202ENST00000338045 KIAA0513O60268 411 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 THBS1P07996 1170 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 HBQ1P09105 142 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 NAT1P18440 290 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 IGFBP5P24593 272 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 POU6F2P78424 691 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-202ENST00000338045 IL11RAQ14626 422 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 ZNHIT3Q15649 155 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-202ENST00000338045 ZIK1Q3SY52 487 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF385CQ66K41 422 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-202ENST00000338045 PPP1R3BQ86XI6 285 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 BMPERQ8N8U9 685 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 PLPP5Q8NEB5 264 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 C16orf52Q8NHV5 167 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 VANGL1Q8TAA9 524 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-202ENST00000338045 FBXL20Q96IG2 436 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 OR10A5Q9H207 317 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 SOX17Q9H6I2 414 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-202ENST00000338045 TRIM45Q9H8W5 580 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-202ENST00000338045 OCIAD1Q9NX40 245 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 CTSFQ9UBX1 484 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 DTX4Q9Y2E6 619 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 PCDHGA8Q9Y5G5 932 aa14.37□□□□□ -0.11
LIMS1-202ENST00000338045 GXYLT2A0PJZ3 443 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 SYNDIG1LA6NDD5 238 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 M0R3H8 397 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 BRINP1O60477 761 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 KCNK2O95069 426 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 GADD45GO95257 159 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF806P0C7X5 589 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 CD59P13987 128 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 FUT4P22083 530 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 CSTF2P33240 577 aaKnown RBP eCLIP14.36□□□□□ -0.11
LIMS1-202ENST00000338045 TRHRP34981 398 aaPredicted RBP14.36□□□□□ -0.11
LIMS1-202ENST00000338045 PGDP52209 483 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 MYBPC1Q00872 1141 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 KCNAB2Q13303 367 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 ELAVL1Q15717 326 aaKnown RBP14.36□□□□□ -0.11
LIMS1-202ENST00000338045 MICAQ29983 383 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 EXOC3L2Q2M3D2 409 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 NKAIN1Q4KMZ8 207 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms