RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 KCNH1O95259 989 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 UQCRC2P22695 453 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 MAP3K8P41279 467 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 IRX1P78414 480 aaPredicted RBP14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 PLGLB1Q02325 96 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 LRRC74AQ0VAA2 488 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 EFR3AQ14156 821 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 DUSP5Q16690 384 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 C6orf120Q7Z4R8 191 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 ZFP62Q8NB50 900 aaPredicted RBP14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 HOXB13Q92826 284 aaPredicted RBP14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 VPS33AQ96AX1 596 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 SLC35A4Q96G79 324 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 SLC35G5Q96KT7 338 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 NODALQ96S42 347 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 SECISBP2Q96T21 854 aaKnown RBP14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 DOHHQ9BU89 302 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 ACTRT3Q9BYD9 372 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 TSPAN10Q9H1Z9 355 aaPredicted RBP14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 METTL7AQ9H8H3 244 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 GPATCH2Q9NW75 528 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 TUBA8Q9NY65 449 aaPredicted RBP14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 CCDC167Q9P0B6 97 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 J3QKU1 62 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 NR5A2O00482 541 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 KRT16P08779 473 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 MST1P26927 711 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 CHI3L1P36222 383 aaPredicted RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 CDKN2CP42773 168 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 PNLIPRP2P54317 469 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 KCNK10P57789 538 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 RPS26P62854 115 aaKnown RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 MRPS22P82650 360 aaKnown RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 AGKQ53H12 422 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 RNFT1Q5M7Z0 435 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 ZNF324BQ6AW86 544 aaPredicted RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 CDC73Q6P1J9 531 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 DNAJC14Q6Y2X3 702 aaPredicted RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 ATCAYQ86WG3 371 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 COX18Q8N8Q8 333 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 GOT1L1Q8NHS2 421 aaPredicted RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 CDS1Q92903 461 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 TMCO6Q96DC7 493 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 JSRP1Q96MG2 331 aaPredicted RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 SLX1AQ9BQ83 275 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 SLC35A5Q9BS91 424 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 TTTY12Q9BZ98 90 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 RMND5AQ9H871 391 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 PROK2Q9HC23 129 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 KLRF1Q9NZS2 232 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 MRTO4Q9UKD2 239 aaKnown RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 VPS4AQ9UN37 437 aa14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.58□□□□□ -0.08
CCDC28A-201ENST00000332797 ANKRD33BA6NCL7 494 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 PRAMEF25A6NGN4 478 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 CCDC154A6NI56 674 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 FAM166BA8MTA8 275 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 RFXANKO14593 260 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 TFECO14948 347 aaPredicted RBP14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 HS6ST1O60243 411 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 IL33O95760 270 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 GSNP06396 782 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 CYP4B1P13584 511 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 CASP3P42574 277 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 PSMD4P55036 377 aaKnown RBP14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 CASP9P55211 416 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 RCAN2Q14206 197 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 TBCELQ5QJ74 424 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 EXOSC6Q5RKV6 272 aaKnown RBP14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 ANGPTL8Q6UXH0 198 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 ZNF621Q6ZSS3 439 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 MSANTD1Q6ZTZ1 278 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 GALNT10Q86SR1 603 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 FUNDC1Q8IVP5 155 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 TRIML2Q8N7C3 387 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 ADAMTS15Q8TE58 950 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 ITCHQ96J02 903 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 STACQ99469 402 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 ANGPTL4Q9BY76 406 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 PIGUQ9H490 435 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 RABEP2Q9H5N1 569 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 SERHLQ9NQF3 203 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 KLHL14Q9P2G3 628 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 BOKQ9UMX3 212 aaPredicted RBP14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 SHANK1Q9Y566 2161 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 EML6Q6ZMW3 1958 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 NPIPA5E9PKD4 350 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 ACOT7O00154 380 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 ICOSLGO75144 302 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 IGKV1D-16P01601 117 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 EDN3P14138 238 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 MATN1P21941 496 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 TDGF1P3P51864 188 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 PPIAP62937 165 aaKnown RBP14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 POU6F2P78424 691 aaPredicted RBP14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 FOXO1Q12778 655 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 C6orf10Q5SRN2 563 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 METTL21CQ5VZV1 264 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 SAXO2Q658L1 398 aa14.57□□□□□ -0.08
CCDC28A-201ENST00000332797 FIGNL1Q6PIW4 674 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms