RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C9orf84Q5VXU9 1444 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 FANCD2Q9BXW9 1451 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 RIMS2Q9UQ26 1411 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 H3BSA7 217 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TRIM77I1YAP6 450 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 HPGDSO60760 199 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 MT-ND4P03905 459 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ALDH2P05091 517 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 UBCP0CG48 685 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 MYF6P23409 242 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CPSF6Q16630 551 aaKnown RBP eCLIP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 SNAI3Q3KNW1 292 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM153CQ494X1 144 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CYB5RLQ6IPT4 315 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ALKAL2Q6UX46 152 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 SSX8Q7RTT4 187 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ANGPTL5Q86XS5 388 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 UNC5BQ8IZJ1 945 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CERS5Q8N5B7 392 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PXT1Q8NFP0 134 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 OR2T34Q8NGX1 318 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 OR10Z1Q8NGY1 313 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 OR2T11Q8NH01 316 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 OR2T3Q8NH03 318 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PTDSS2Q9BVG9 487 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 GPR83Q9NYM4 423 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 NOCTQ9UK39 431 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ADGRF5Q8IZF2 1346 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PPIP5K1Q6PFW1 1433 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 B4GALT4O60513 344 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 GH1P01241 217 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 GJB1P08034 283 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TFEBP19484 476 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 BCKDHBP21953 392 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PTAFRP25105 342 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 NDUFS1P28331 727 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TMPRSS3P57727 454 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 RBMS3Q6XE24 437 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CCNJLQ8IV13 435 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 GCNT2Q8N0V5 402 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 OR5M3Q8NGP4 307 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 OR5H6Q8NGV6 325 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 OR4K15Q8NH41 348 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC2A12Q8TD20 617 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PIP5K1AQ99755 562 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 NTMT1Q9BV86 223 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CHRDQ9H2X0 955 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 DHX33Q9H6R0 707 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TRAV21A0A0B4J279 112 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PIGBOS1A0A0B4J2F0 54 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 C17orf112F2Z3M2 114 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TGM5O43548 720 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 SERPINA5P05154 406 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF735P0CB33 412 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 NID1P14543 1247 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PITPNBP48739 271 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 AQP4P55087 323 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ADGRE1Q14246 886 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 DOK7Q18PE1 504 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 FBXO46Q6PJ61 603 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PARP16Q8N5Y8 322 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 NLGN2Q8NFZ4 835 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 UBE2E3Q969T4 207 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TEAD3Q99594 435 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PARD6GQ9BYG4 376 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ABRACLQ9P1F3 81 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PLLPQ9Y342 182 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CEP152O94986 1710 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 GGT3PA6NGU5 568 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 H0YGN5 161 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 M0R3E3 92 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 GSRP00390 522 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CD1AP06126 327 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 C1GALT1C1LP0DN25 315 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CALCRP30988 508 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC6A3Q01959 620 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CREMQ03060 361 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF33BQ06732 778 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 DMWDQ09019 674 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 DOC2BQ14184 412 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 C9orf152Q5JTZ5 239 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF324BQ6AW86 544 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CD300LGQ6UXG3 332 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 MIB2Q96AX9 1013 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 POPDC2Q9HBU9 364 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 THG1LQ9NWX6 298 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 PLEK2Q9NYT0 353 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 MMP20O60882 483 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 F2RL1P55085 397 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 EFEMP1Q12805 493 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 SEMA3BQ13214 749 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 NFATC2Q13469 925 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 EBPQ15125 230 aaKnown RBP7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 TOMM34Q15785 309 aaPredicted RBP7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 SWSAP1Q6NVH7 229 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 METTL2BQ6P1Q9 378 aaKnown RBP7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 OTOP3Q7RTS5 596 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 OR4C13Q8NGP0 309 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 HMGB4Q8WW32 186 aa7.27□□□□□ -1.24
LIMCH1-201ENST00000313860 CD101Q93033 1021 aa7.27□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms