RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ARL11Q969Q4 196 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 PNPLA2Q96AD5 504 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 TXNDC15Q96J42 360 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 PBDC1Q9BVG4 233 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 SMG9Q9H0W8 520 aaKnown RBP12.18□□□□□ -0.46
COL3A1-201ENST00000304636 POLMQ9NP87 494 aaPredicted RBP12.18□□□□□ -0.46
COL3A1-201ENST00000304636 CNIH4Q9P003 139 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 KLHL42Q9P2K6 505 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 MYH1P12882 1939 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 MYH4Q9Y623 1939 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 DRGXA6NNA5 263 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 SLC16A6O15403 523 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 CA12O43570 354 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 ADH1BP00325 375 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 IFNA2P01563 188 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 CSF1P09603 554 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 DDCP20711 480 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 RPL35P42766 123 aaKnown RBP12.18□□□□□ -0.46
COL3A1-201ENST00000304636 MAP4K2Q12851 820 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 HYAL2Q12891 473 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 ZMYND11Q15326 602 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 CNKSR3Q6P9H4 555 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 HAVCR2Q8TDQ0 301 aa12.18□□□□□ -0.46
COL3A1-201ENST00000304636 C1orf196B1AJZ1 125 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 HLA-EP13747 358 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 UGT2B7P16662 529 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 GRPRP30550 384 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 CTSOP43234 321 aaPredicted RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 RIDAP52758 137 aaKnown RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 RPS15AP62244 130 aaKnown RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 FOXB2Q5VYV0 432 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF440Q8IYI8 595 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 APCDD1Q8J025 514 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 OR5H6Q8NGV6 325 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 OR4K13Q8NH42 304 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 PRRC1Q96M27 445 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 SLC5A7Q9GZV3 580 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 SPHK2Q9NRA0 654 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 NDUFAF4Q9P032 175 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 B4DGG1 531 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 C11orf98E9PRG8 122 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 ACOT7O00154 380 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 E2F3O00716 465 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 PRSS3P35030 304 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 PRRT3Q5FWE3 981 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 NDUFAF5Q5TEU4 345 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 OR5T2Q8NGG2 359 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 IGSF21Q96ID5 467 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 ABCG4Q9H172 646 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 CYP17A1P05093 508 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 ENDOUP21128 410 aaKnown RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 ADARB1P78563 741 aaKnown RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 CYCSP99999 105 aaKnown RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 TLE2Q04725 743 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 AAK1Q2M2I8 961 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 NKAPLQ5M9Q1 402 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 SYT6Q5T7P8 510 aaPredicted RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 PXKQ7Z7A4 578 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 FAM83FQ8NEG4 500 aaPredicted RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 OR13C3Q8NGS6 347 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 OR2T4Q8NH00 348 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 TMEM163Q8TC26 289 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 CNTNAP3BQ96NU0 1288 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 DPH7Q9BTV6 452 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 C11orf84Q9BUA3 381 aaPredicted RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 SAP130Q9H0E3 1048 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 DMRT3Q9NQL9 472 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 POU2F3Q9UKI9 436 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 ADAMTS5Q9UNA0 930 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 A3GALT2U3KPV4 340 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 ARPC1BO15143 372 aaKnown RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 RBMS1P29558 406 aaKnown RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 C2orf27AQ580R0 203 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 SLC46A3Q7Z3Q1 461 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 LRRTM3Q86VH5 581 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 NT5C3BQ969T7 300 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 PHB2Q99623 299 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 GMPR2Q9P2T1 348 aaKnown RBP12.17□□□□□ -0.46
COL3A1-201ENST00000304636 IL20RAQ9UHF4 553 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 USP22Q9UPT9 525 aa12.17□□□□□ -0.46
COL3A1-201ENST00000304636 TEX51A0A1B0GUA7 166 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ACP2P11117 423 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 CHRNB1P11230 501 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 AKR1C4P17516 323 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 AMY2BP19961 511 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 LRIF1Q5T3J3 769 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 SSX6Q7RTT6 188 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 SLC35F2Q8IXU6 374 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ADAMTS16Q8TE57 1224 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 MFFQ9GZY8 342 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 PRTFDC1Q9NRG1 225 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 KLRF1Q9NZS2 232 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 TRAV18A0A075B6X5 111 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF860A6NHJ4 632 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 WASHC1A8K0Z3 465 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 ARHGAP33O14559 1287 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 POLR2CP19387 275 aaPredicted RBP12.16□□□□□ -0.46
COL3A1-201ENST00000304636 LSSP48449 732 aa12.16□□□□□ -0.46
COL3A1-201ENST00000304636 PUS10Q3MIT2 529 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms