RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 BEX3Q00994 111 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 ILKQ13418 452 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SEC23BQ15437 767 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 INAVAQ3KP66 663 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 MFSD14CQ5VZR4 134 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 IL17RDQ8NFM7 739 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 PIGXQ8TBF5 258 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CA5BP1Q8WTZ4 195 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 TMEM27Q9HBJ8 222 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CTPS2Q9NRF8 586 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 TEX10Q9NXF1 929 aaPredicted RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 VSX1Q9NZR4 365 aaPredicted RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 GALPQ9UBC7 116 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 VPS29Q9UBQ0 182 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 REV1Q9UBZ9 1251 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 A0A0G2JN53 185 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 TLR4O00206 839 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 UBFD1O14562 309 aaKnown RBP6.09□□□□□ -1.44
VPS35-201ENST00000299138 ARL6IP5O75915 188 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 TRBC1P01850 177 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 HLA-EP13747 358 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 CD247P20963 164 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 MMP12P39900 470 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 POLR2HP52434 150 aaKnown RBP6.09□□□□□ -1.44
VPS35-201ENST00000299138 PTTG1IPP53801 180 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 ERVFC1P60507 584 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 SNTA1Q13424 505 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 TPBGQ13641 420 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 MICAQ29983 383 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 PAN2Q504Q3 1202 aaKnown RBP6.09□□□□□ -1.44
VPS35-201ENST00000299138 LYRM7Q5U5X0 104 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 PRAMEF13Q5VWM6 474 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 C19orf48Q6RUI8 117 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 AKR7LQ8NHP1 331 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 GPR151Q8TDV0 419 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 ABHD5Q8WTS1 349 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 C3orf30Q96M34 536 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 IL4I1Q96RQ9 567 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 C16orf70Q9BSU1 422 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 HRH4Q9H3N8 390 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 SMCO4Q9NRQ5 59 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 DZANK1Q9NVP4 752 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 GLTPQ9NZD2 209 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 VAPAQ9P0L0 249 aa6.09□□□□□ -1.44
VPS35-201ENST00000299138 LRRN3E7EW58 273 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SLC9A3R1O14745 358 aaPredicted RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 TERTO14746 1132 aaKnown RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 NRP1O14786 923 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TCAPO15273 167 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ICMTO60725 284 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 RAB3DO95716 219 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CTSHP09668 335 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 GKN3PP0CG01 181 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SLC6A9P48067 706 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ZNF84P51523 738 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 NUDT6P53370 316 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 DSC2Q02487 901 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CREMQ03060 361 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 FAM110CQ1W6H9 321 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SLC51BQ86UW2 128 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 AVL9Q8NBF6 648 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 FBXO15Q8NCQ5 510 aaPredicted RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 DUSP18Q8NEJ0 188 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 OR6F1Q8NGZ6 308 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SOCS4Q8WXH5 440 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SLC12A9Q9BXP2 914 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CIPCQ9C0C6 399 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 LRRN3Q9H3W5 708 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ALKBH4Q9NXW9 302 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ZDHHC3Q9NYG2 299 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 HAO2Q9NYQ3 351 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 EXTL2Q9UBQ6 330 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TMEFF2Q9UIK5 374 aaPredicted RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 RALYQ9UKM9 306 aaKnown RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 ARL2-SNX15V9GYD0 113 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 NUDT19A8MXV4 375 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 KIAA0513O60268 411 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 B3GAT3O94766 335 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SIX3O95343 332 aaPredicted RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 CNOT4O95628 575 aaKnown RBP6.08□□□□□ -1.44
VPS35-201ENST00000299138 OSMP13725 252 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 GLP1RP43220 463 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SELENOWP63302 87 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 EIPR1Q53HC9 387 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CD276Q5ZPR3 534 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CD300LDQ6UXZ3 194 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 RPLP0P6Q8NHW5 317 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CLEC4CQ8WTT0 213 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 MSLNLQ96KJ4 702 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 OSMRQ99650 979 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TTTY10Q9BZA0 68 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SLC2A6Q9UGQ3 507 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 TEX13CA0A0J9YWL9 993 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 SLC12A8A0AV02 714 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 BRINP1O60477 761 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 GADD45GO95257 159 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 ZNF17P17021 662 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 CDKN2DP55273 166 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 EFEMP1Q12805 493 aa6.08□□□□□ -1.44
VPS35-201ENST00000299138 YIF1BQ5BJH7 314 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms