RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SOCS6O14544 535 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 KIAA0355O15063 1070 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 PI15O43692 258 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 CHP2O43745 196 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 ORC5O43913 435 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 GNRH1P01148 92 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 RB1P06400 928 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 SLC6A1P30531 599 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 BTCP35070 178 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 NNMTP40261 264 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 GPR4P46093 362 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 AADACL4Q5VUY2 407 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 KIAA1211LQ6NV74 962 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 VRK2Q86Y07 508 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 NKAIN4Q8IVV8 208 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 SIRT6Q8N6T7 355 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 POGLUT1Q8NBL1 392 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 AKAP1Q92667 903 aaKnown RBP eCLIP11.64□□□□□ -0.55
NUP88-201ENST00000225696 IRF7Q92985 503 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 DTD2Q96FN9 168 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 MS4A3Q96HJ5 214 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 PRRC1Q96M27 445 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 SECISBP2Q96T21 854 aaKnown RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 TIMP4Q99727 224 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 DDX31Q9H8H2 851 aaKnown RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 SAGE1Q9NXZ1 904 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 SLC23A2Q9UGH3 650 aa11.64□□□□□ -0.55
NUP88-201ENST00000225696 EXOSC1Q9Y3B2 195 aaKnown RBP11.64□□□□□ -0.55
NUP88-201ENST00000225696 MYO10Q9HD67 2058 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 TSPAN11A1L157 253 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 C4orf51C9J302 202 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 PGRMC2O15173 223 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 PIP5K1CO60331 668 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 NOS1APO75052 506 aaPredicted RBP11.63□□□□□ -0.55
NUP88-201ENST00000225696 PAPLNO95428 1278 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 MYCP01106 439 aaPredicted RBP11.63□□□□□ -0.55
NUP88-201ENST00000225696 THY1P04216 161 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 HMGN2P05204 90 aaKnown RBP11.63□□□□□ -0.55
NUP88-201ENST00000225696 SERPIND1P05546 499 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 EIF4EP06730 217 aaKnown RBP11.63□□□□□ -0.55
NUP88-201ENST00000225696 C8orf89P0DMQ9 161 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 HOXD10P28358 340 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 INPP1P49441 399 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 OR10A3P58181 314 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 STXBP1P61764 594 aaKnown RBP11.63□□□□□ -0.55
NUP88-201ENST00000225696 ARHGEF6Q15052 776 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 PLA1AQ53H76 456 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 WDR45BQ5MNZ6 344 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 ANKRD54Q6NXT1 300 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 ZNF793Q6ZN11 406 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 CCDC28AQ8IWP9 274 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 KRT78Q8N1N4 520 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 OR11H7Q8NGC8 314 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 OR8H1Q8NGG4 311 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 DNAJA4Q8WW22 397 aaPredicted RBP11.63□□□□□ -0.55
NUP88-201ENST00000225696 OTULINQ96BN8 352 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 COQ10AQ96MF6 247 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 TBX5Q99593 518 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 C17orf62Q9BQA9 187 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 DPH7Q9BTV6 452 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 ISYNA1Q9NPH2 558 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 ATP13A2Q9NQ11 1180 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 SLCO1C1Q9NYB5 712 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 ZFR2Q9UPR6 939 aaKnown RBP11.63□□□□□ -0.55
NUP88-201ENST00000225696 SLC9A8Q9Y2E8 581 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 KIAA1549LQ6ZVL6 1849 aa11.63□□□□□ -0.55
NUP88-201ENST00000225696 SURF4O15260 269 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 CCL16O15467 120 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 TRIM3O75382 744 aaPredicted RBP11.62□□□□□ -0.55
NUP88-201ENST00000225696 HLA-DPB1P04440 258 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 HOXB3P14651 431 aaPredicted RBP11.62□□□□□ -0.55
NUP88-201ENST00000225696 FUT1P19526 365 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 CXCL3P19876 107 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 OMPP47874 163 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 NCBP2P52298 156 aaKnown RBP eCLIP11.62□□□□□ -0.55
NUP88-201ENST00000225696 TAS2R41P59536 307 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 RIN1Q13671 783 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 NDUFA9Q16795 377 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 NDUFAF5Q5TEU4 345 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 SDE2Q6IQ49 451 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 METAP1DQ6UB28 335 aaPredicted RBP11.62□□□□□ -0.55
NUP88-201ENST00000225696 SMAP2Q8WU79 429 aaPredicted RBP11.62□□□□□ -0.55
NUP88-201ENST00000225696 UBE2E3Q969T4 207 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 PHF21AQ96BD5 680 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 OR52A5Q9H2C5 316 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 RHBGQ9H310 441 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 KLHL31Q9H511 634 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 MED20Q9H944 212 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 ZFP64Q9NPA5 681 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 IMP3Q9NV31 184 aaKnown RBP11.62□□□□□ -0.55
NUP88-201ENST00000225696 AHSPQ9NZD4 102 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 MOSPD1Q9UJG1 213 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 ERAL1O75616 437 aaKnown RBP11.62□□□□□ -0.55
NUP88-201ENST00000225696 ZIC2O95409 532 aaPredicted RBP11.62□□□□□ -0.55
NUP88-201ENST00000225696 SHC1P29353 583 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 ESCO2Q56NI9 601 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 TOR2AQ5JU69 321 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 ZBTB37Q5TC79 503 aa11.62□□□□□ -0.55
NUP88-201ENST00000225696 ZNF322Q6U7Q0 402 aaPredicted RBP11.62□□□□□ -0.55
NUP88-201ENST00000225696 LCTLQ6UWM7 567 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms