RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FAM187AA6NFU0 413 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 INAFM1C9JVW0 142 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 RAD51CO43502 376 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 HCRTR2O43614 444 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 GUCY1B2O75343 617 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 KLHL2O95198 593 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 PCSK2P16519 638 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 MAGEA4P43358 317 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 EMDP50402 254 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 PLTPP55058 493 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 MRPS35P82673 323 aaKnown RBP17.55■□□□□ 0.4
CLN3-262ENST00000637699 PPP2R2BQ00005 443 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 IFT88Q13099 833 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 KLC3Q6P597 504 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 CHMP1BQ7LBR1 199 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 COMMD6Q7Z4G1 85 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 BTLAQ7Z6A9 289 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 CCDC91Q7Z6B0 441 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 UBQLNLQ8IYU4 475 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 PTGR2Q8N8N7 351 aaPredicted RBP17.55■□□□□ 0.4
CLN3-262ENST00000637699 TRPC4APQ8TEL6 797 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 KLHL29Q96CT2 875 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 PHF21BQ96EK2 531 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 PGM2Q96G03 612 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 ZC3HAV1LQ96H79 300 aaKnown RBP17.55■□□□□ 0.4
CLN3-262ENST00000637699 GPR78Q96P69 363 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 ADOQ96SZ5 270 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 OPN3Q9H1Y3 402 aaPredicted RBP17.55■□□□□ 0.4
CLN3-262ENST00000637699 PRODH2Q9UF12 536 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 PSME2Q9UL46 239 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 SLC12A4Q9UP95 1085 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 RTTNQ86VV8 2226 aa17.55■□□□□ 0.4
CLN3-262ENST00000637699 DSCAMO60469 2012 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 A0A096LPK6 155 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 HMX2A2RU54 273 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 FRG2CA6NGY1 282 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 OR6C70A6NIJ9 312 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 SLC22A20A6NK97 555 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 TO15178 435 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 ZIC3O60481 467 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 NME6O75414 186 aaPredicted RBP17.54■□□□□ 0.4
CLN3-262ENST00000637699 CRYGSP22914 178 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 ALDH9A1P49189 494 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 SIRPAP78324 504 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 NAB1Q13506 487 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 OR2A2Q6IF42 318 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 METTL2BQ6P1Q9 378 aaKnown RBP17.54■□□□□ 0.4
CLN3-262ENST00000637699 ZNF474Q6S9Z5 364 aaPredicted RBP17.54■□□□□ 0.4
CLN3-262ENST00000637699 ZNF550Q7Z398 422 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 TM4SF18Q96CE8 201 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 NSUN5Q96P11 429 aaKnown RBP17.54■□□□□ 0.4
CLN3-262ENST00000637699 HS3ST6Q96QI5 342 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 PIGQQ9BRB3 760 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 ANKRA2Q9H9E1 313 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 FARSBQ9NSD9 589 aaKnown RBP17.54■□□□□ 0.4
CLN3-262ENST00000637699 HEY2Q9UBP5 337 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 GPR55Q9Y2T6 319 aaPredicted RBP17.54■□□□□ 0.4
CLN3-262ENST00000637699 ZNF780BQ9Y6R6 833 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 COL6A5A8TX70 2615 aa17.54■□□□□ 0.4
CLN3-262ENST00000637699 CRHP06850 196 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 POU2F1P14859 743 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 DPP4P27487 766 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 UGT2B10P36537 528 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 KCNJ5P48544 419 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 UAP1Q16222 522 aaPredicted RBP17.53■□□□□ 0.4
CLN3-262ENST00000637699 PPP1R14CQ8TAE6 165 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 FIG4Q92562 907 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 DTNBP1Q96EV8 351 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 CNRIP1Q96F85 164 aaPredicted RBP17.53■□□□□ 0.4
CLN3-262ENST00000637699 NTMT1Q9BV86 223 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 VPS11Q9H270 941 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 ELOVL6Q9H5J4 265 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 ZBTB26Q9HCK0 441 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 PFDN4Q9NQP4 134 aa17.53■□□□□ 0.4
CLN3-262ENST00000637699 MRPS18CQ9Y3D5 142 aaKnown RBP17.53■□□□□ 0.4
CLN3-262ENST00000637699 FBN1P35555 2871 aaKnown RBP17.53■□□□□ 0.4
CLN3-262ENST00000637699 C17orf51A8MQB3 221 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 B4DXG7 233 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 GRK2P25098 689 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 TYK2P29597 1187 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 CCKARP32238 428 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 KRT20P35900 424 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 KIR2DL2P43627 348 aaPredicted RBP17.52■□□□□ 0.4
CLN3-262ENST00000637699 PCYT1AP49585 367 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 CORO7P57737 925 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 B3GALT5-AS1P59052 145 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 GALNT1Q10472 559 aaPredicted RBP17.52■□□□□ 0.4
CLN3-262ENST00000637699 TRAF3Q13114 568 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 BCL2A1Q16548 175 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 TECRLQ5HYJ1 363 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 ANKRD34AQ69YU3 496 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 MILR1Q7Z6M3 343 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 PLD6Q8N2A8 252 aaKnown RBP17.52■□□□□ 0.4
CLN3-262ENST00000637699 OR4F6Q8NGB9 312 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 FBXO25Q8TCJ0 367 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 SLC35A4Q96G79 324 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 ZNF681Q96N22 645 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 SLC39A3Q9BRY0 314 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 LRRC1Q9BTT6 524 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 TRPS1Q9UHF7 1281 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms