RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PPP4R4Q6NUP7 873 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 RAD9BQ6WBX8 426 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 MCUQ8NE86 351 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 OR5M1Q8NGP8 315 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 FAM45AQ8TCE6 357 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 C10orf105Q8TEF2 133 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 FAM168AQ92567 244 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 RGMAQ96B86 450 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 MSI2Q96DH6 328 aaKnown RBP12.98□□□□□ -0.33
CLN3-249ENST00000636685 CMTM7Q96FZ5 175 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 FANCFQ9NPI8 374 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 ASB4Q9Y574 426 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 DPRXA6NFQ7 191 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 PGRMC2O15173 223 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 TMPRSS11DO60235 418 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 EEDO75530 441 aaKnown RBP12.97□□□□□ -0.33
CLN3-249ENST00000636685 FESP07332 822 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 EPORP19235 508 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 NT5EP21589 574 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 GRK2P25098 689 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 RAP1GDS1P52306 607 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 CTBP2P56545 445 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 IRF8Q02556 426 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 CHIT1Q13231 466 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 TAB1Q15750 504 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 PDK4Q16654 411 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 RAET1LQ5VY80 246 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 MRM1Q6IN84 353 aaKnown RBP12.97□□□□□ -0.33
CLN3-249ENST00000636685 BEND4Q6ZU67 534 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 CNTN4Q8IWV2 1026 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 ZCCHC7Q8N3Z6 543 aaKnown RBP12.97□□□□□ -0.33
CLN3-249ENST00000636685 C3orf56Q8N813 242 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 ADCY4Q8NFM4 1077 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 STEAP2Q8NFT2 490 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 OR7G1Q8NGA0 311 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 OR4K17Q8NGC6 315 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 STMN4Q9H169 189 aaPredicted RBP12.97□□□□□ -0.33
CLN3-249ENST00000636685 FOLH1BQ9HBA9 442 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 CTNNAL1Q9UBT7 734 aa12.97□□□□□ -0.33
CLN3-249ENST00000636685 A0A0G2JK05 382 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 H3BML4 177 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 PLGP00747 810 aaPredicted RBP12.96□□□□□ -0.33
CLN3-249ENST00000636685 FCGR2AP12318 317 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 HK1P19367 917 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 IL11P20809 199 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 DSCR4P56555 118 aaPredicted RBP12.96□□□□□ -0.33
CLN3-249ENST00000636685 DEFA6Q01524 100 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 DDX39BQ13838 428 aaKnown RBP12.96□□□□□ -0.33
CLN3-249ENST00000636685 EXOSC7Q15024 291 aaKnown RBP12.96□□□□□ -0.33
CLN3-249ENST00000636685 CR1LQ2VPA4 569 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 FIGNL1Q6PIW4 674 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 ADAMTSL2Q86TH1 951 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 NKAPQ8N5F7 415 aaKnown RBP12.96□□□□□ -0.33
CLN3-249ENST00000636685 ANKRD49Q8WVL7 239 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 PROX1Q92786 737 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 TMBIM1Q969X1 311 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 TMCO6Q96DC7 493 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 TRIM44Q96DX7 344 aaPredicted RBP12.96□□□□□ -0.33
CLN3-249ENST00000636685 DTNBP1Q96EV8 351 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 PRRG4Q9BZD6 226 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 NGBQ9NPG2 151 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 FAIMQ9NVQ4 179 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 LYARQ9NX58 379 aaKnown RBP12.96□□□□□ -0.33
CLN3-249ENST00000636685 BCAP29Q9UHQ4 241 aa12.96□□□□□ -0.33
CLN3-249ENST00000636685 SHISA9B4DS77 424 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 ACOX3O15254 700 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 SS18L1O75177 396 aaPredicted RBP12.95□□□□□ -0.34
CLN3-249ENST00000636685 REM1O75628 298 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 STK16O75716 305 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 FAM58BPP0C7Q3 252 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 PGAM1P18669 254 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 PIK3R1P27986 724 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 ADH6P28332 368 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 GGT5P36269 586 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 GAS1P54826 345 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 CDH11P55287 796 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 RPS3AP61247 264 aaKnown RBP12.95□□□□□ -0.34
CLN3-249ENST00000636685 IRF9Q00978 393 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 TGFBIQ15582 683 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 TBCCQ15814 346 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 SGCBQ16585 318 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 C6orf163Q5TEZ5 329 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 AGAP6Q5VW22 663 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 OR52E8Q6IFG1 317 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 C11orf71Q6IPW1 123 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 MED27Q6P2C8 311 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 FAM111BQ6SJ93 734 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 SEZ6L2Q6UXD5 910 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 STK32CQ86UX6 486 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 LAS2Q8IYD9 372 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 METTL25Q8N6Q8 603 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 OR7G3Q8NG95 312 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 GFM2Q969S9 779 aaKnown RBP12.95□□□□□ -0.34
CLN3-249ENST00000636685 GMPPAQ96IJ6 420 aaPredicted RBP12.95□□□□□ -0.34
CLN3-249ENST00000636685 COL21A1Q96P44 957 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 ZNF717Q9BY31 904 aaPredicted RBP12.95□□□□□ -0.34
CLN3-249ENST00000636685 DSN1Q9H410 356 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 C12orf49Q9H741 205 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 WDR41Q9HAD4 459 aa12.95□□□□□ -0.34
CLN3-249ENST00000636685 A0A0A6YYD5 115 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms