RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PPP6CO00743 305 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 ULK1O75385 1050 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 ERN1O75460 977 aaKnown RBP16.77■□□□□ 0.27
CLN3-241ENST00000635861 SUPT7LO94864 414 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 ESRRBO95718 433 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 ABHD2P08910 425 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 ECHS1P30084 290 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 SRD5A2P31213 254 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 EFR3AQ14156 821 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 HEPACAMQ14CZ8 416 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 CEBPEQ15744 281 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 TRMT12Q53H54 448 aaKnown RBP16.77■□□□□ 0.27
CLN3-241ENST00000635861 ZNF628Q5EBL2 1059 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 ZNF678Q5SXM1 525 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 DCST1Q5T197 706 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 AAGABQ6PD74 315 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 RPS27LQ71UM5 84 aaKnown RBP16.77■□□□□ 0.27
CLN3-241ENST00000635861 ADGRE4PQ86SQ3 457 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 YRDCQ86U90 279 aaKnown RBP16.77■□□□□ 0.27
CLN3-241ENST00000635861 IFNEQ86WN2 208 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 ADCY4Q8NFM4 1077 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 OR14L1PQ8NHC6 308 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 IFT81Q8WYA0 676 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 STMN4Q9H169 189 aaPredicted RBP16.77■□□□□ 0.27
CLN3-241ENST00000635861 GIMAP4Q9NUV9 329 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 EHD3Q9NZN3 535 aa16.77■□□□□ 0.27
CLN3-241ENST00000635861 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.77■□□□□ 0.27
CLN3-241ENST00000635861 VPS13CQ709C8 3753 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 EXOC1LA0A1B0GW35 172 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 RCBTB2O95199 551 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 TMIGD3P0DMS9 266 aaPredicted RBP16.76■□□□□ 0.27
CLN3-241ENST00000635861 PCSK2P16519 638 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 KRT20P35900 424 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 WNT3P56703 355 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 PPP2R2AP63151 447 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 MRPS22P82650 360 aaKnown RBP16.76■□□□□ 0.27
CLN3-241ENST00000635861 HMGCS1Q01581 520 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 DUSP2Q05923 314 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 SNTB1Q13884 538 aaKnown RBP16.76■□□□□ 0.27
CLN3-241ENST00000635861 GALNT18Q6P9A2 607 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 GPRIN3Q6ZVF9 776 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 PLCZ1Q86YW0 608 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 SLC22A9Q8IVM8 553 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 IFT20Q8IY31 132 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 MMP21Q8N119 569 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 CDYL2Q8N8U2 506 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 WDSUB1Q8N9V3 476 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 WNT2BQ93097 391 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 EPB41L4BQ9H329 900 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 GALNT9Q9HCQ5 603 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 HEY2Q9UBP5 337 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 MAPRE3Q9UPY8 281 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 DLGAP4Q9Y2H0 992 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 WIF1Q9Y5W5 379 aa16.76■□□□□ 0.27
CLN3-241ENST00000635861 SERTM1A2A2V5 107 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 H0Y3Z8 333 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 PCDH7O60245 1069 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 SLITRK5O94991 958 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 ENO1P06733 434 aaKnown RBP16.75■□□□□ 0.27
CLN3-241ENST00000635861 TSPAN8P19075 237 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 IMPDH1P20839 514 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 ATP5F1P24539 256 aaPredicted RBP16.75■□□□□ 0.27
CLN3-241ENST00000635861 HMOX2P30519 316 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 PNLIPRP2P54317 469 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 PKNOX1P55347 436 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 GFRA1P56159 465 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 MRPS35P82673 323 aaKnown RBP16.75■□□□□ 0.27
CLN3-241ENST00000635861 ACSM2AQ08AH3 577 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 GAB1Q13480 694 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 LTB4RQ15722 352 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 UNC50Q53HI1 259 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 ACSM2BQ68CK6 577 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 PAMR1Q6UXH9 720 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 EIF1ADQ8N9N8 165 aaKnown RBP16.75■□□□□ 0.27
CLN3-241ENST00000635861 METTL6Q8TCB7 284 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 RNF138Q8WVD3 245 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 TMBIM1Q969X1 311 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 PIGMQ9H3S5 423 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 SERHLQ9NQF3 203 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 PFDN4Q9NQP4 134 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 SIRT5Q9NXA8 310 aa16.75■□□□□ 0.27
CLN3-241ENST00000635861 PCNX3Q9H6A9 2034 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 GNG14A0A1W2PPG7 69 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 EEF1E1-BLOC1S5C9J1V9 151 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 EEF1E1O43324 174 aaKnown RBP16.74■□□□□ 0.27
CLN3-241ENST00000635861 PLOD3O60568 738 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 TSPAN2O60636 221 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 REM1O75628 298 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 IL3P08700 152 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 CT45A8P0DMV1 189 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 CT45A9P0DMV2 189 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 DGKQP52824 942 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 NAA20P61599 178 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 LCP2Q13094 533 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 CT45A2Q5DJT8 189 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 WDR93Q6P2C0 686 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 CCDC116Q8IYX3 515 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 C9orf106Q8NAJ2 232 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 SIMC1Q8NDZ2 872 aa16.74■□□□□ 0.27
CLN3-241ENST00000635861 ACMSDQ8TDX5 336 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms