RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NPFFR2Q9Y5X5 522 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 PRSS51A0A1B0GVH4 220 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 NME2P1O60361 137 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 PSMG1O95456 288 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 CPSF4O95639 269 aaKnown RBP16.66■□□□□ 0.26
CLN3-239ENST00000628023 P04436 131 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 NME2P22392 152 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 ABCD3P28288 659 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 CCT3P49368 545 aaKnown RBP16.66■□□□□ 0.26
CLN3-239ENST00000628023 WNT3P56703 355 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 HBA1P69905 142 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 PSPHP78330 225 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 SQLEQ14534 574 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 BHLHB9Q6PI77 547 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 NPSR1Q6W5P4 371 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 MDGA2Q7Z553 956 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 WDR53Q7Z5U6 358 aaPredicted RBP16.66■□□□□ 0.26
CLN3-239ENST00000628023 SLC34A3Q8N130 599 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 OR9I1Q8NGQ6 314 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 FBXO30Q8TB52 745 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 SFXN5Q8TD22 340 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 JADE3Q92613 823 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 MOAP1Q96BY2 351 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 OMA1Q96E52 524 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 SLC5A6Q9Y289 635 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 PCDHGB6Q9Y5F9 930 aa16.66■□□□□ 0.26
CLN3-239ENST00000628023 TEX15Q9BXT5 2789 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 A1L4Q6 167 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 TP53I11O14683 189 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 IL6P05231 212 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 IL12BP29460 328 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 PRIM2P49643 509 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 POLR2JP52435 117 aaKnown RBP16.65■□□□□ 0.26
CLN3-239ENST00000628023 ARFIP2P53365 341 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 FBXW4P57775 412 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 RPP38P78345 283 aaKnown RBP16.65■□□□□ 0.26
CLN3-239ENST00000628023 LRRC74AQ0VAA2 488 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 ZNF791Q3KP31 576 aaPredicted RBP16.65■□□□□ 0.26
CLN3-239ENST00000628023 VPS26BQ4G0F5 336 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 RPUSD3Q6P087 351 aaKnown RBP16.65■□□□□ 0.26
CLN3-239ENST00000628023 LYPD8Q6UX82 237 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 ZNF227Q86WZ6 799 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 CDRT4Q8N9R6 151 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 OR10G3Q8NGC4 313 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 OR5AK3PQ8NH89 298 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 PSMA8Q8TAA3 256 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 SLC9A6Q92581 669 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 LMF2Q9BU23 707 aaKnown RBP16.65■□□□□ 0.26
CLN3-239ENST00000628023 Q9N2J8 555 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 SACM1LQ9NTJ5 587 aa16.65■□□□□ 0.26
CLN3-239ENST00000628023 RNF103-CHMP3A0A140T963 221 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 FAM234BA2RU67 622 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 TTC36A6NLP5 189 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 KLRC4-KLRK1H3BQV0 150 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 TO15178 435 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 REM1O75628 298 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 PPM1BO75688 479 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 CT45A8P0DMV1 189 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 CT45A9P0DMV2 189 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 CCL3P10147 92 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 ATP4BP51164 291 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 GYS2P54840 703 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 KCNK10P57789 538 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 GPR85P60893 370 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 IRX1P78414 480 aaPredicted RBP16.64■□□□□ 0.25
CLN3-239ENST00000628023 PMP22Q01453 160 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 LASP1Q14847 261 aaKnown RBP16.64■□□□□ 0.25
CLN3-239ENST00000628023 NTRK2Q16620 822 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 TIGD2Q4W5G0 525 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 CT45A2Q5DJT8 189 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 SLC22A10Q63ZE4 541 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 HIST2H2BCQ6DN03 193 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 CGB2Q6NT52 195 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 MFSD12Q6NUT3 480 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 MAMDC2Q7Z304 686 aaPredicted RBP16.64■□□□□ 0.25
CLN3-239ENST00000628023 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.64■□□□□ 0.25
CLN3-239ENST00000628023 GPR151Q8TDV0 419 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 TMBIM1Q969X1 311 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 ZNF317Q96PQ6 595 aaPredicted RBP16.64■□□□□ 0.25
CLN3-239ENST00000628023 PANX1Q96RD7 426 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 YIPF4Q9BSR8 244 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 NSRP1Q9H0G5 558 aaKnown RBP16.64■□□□□ 0.25
CLN3-239ENST00000628023 RABEP2Q9H5N1 569 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 RMND5AQ9H871 391 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 CCDC167Q9P0B6 97 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 NTMQ9P121 344 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 BTNL2Q9UIR0 455 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 FAF1Q9UNN5 650 aaPredicted RBP16.64■□□□□ 0.25
CLN3-239ENST00000628023 UNC79Q9P2D8 2635 aa16.64■□□□□ 0.25
CLN3-239ENST00000628023 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 G3V3Y1 287 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 NR5A2O00482 541 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 PEX1O43933 1283 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 HMGN2P05204 90 aaKnown RBP16.63■□□□□ 0.25
CLN3-239ENST00000628023 KRT16P08779 473 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 ALOX5P09917 674 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 GABRA3P34903 492 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 RFX3P48380 749 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 MRPL19P49406 292 aaKnown RBP16.63■□□□□ 0.25
CLN3-239ENST00000628023 MEOX1P50221 254 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms