RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 PIGXQ8TBF5 258 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 EFHD2Q96C19 240 aaPredicted RBP14.72□□□□□ -0.05
CPSF1-213ENST00000620219 ARRDC1-AS1Q9H2J1 176 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 TMEM9Q9P0T7 183 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 NEUROG3Q9Y4Z2 214 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 GLB1P16278 677 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 RHCEP18577 417 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 DEPDC4Q8N2C3 294 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 OR52E4Q8NGH9 312 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 B4GALNT2Q8NHY0 566 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 AMBRA1Q9C0C7 1298 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 NMNAT1Q9HAN9 279 aaPredicted RBP14.72□□□□□ -0.05
CPSF1-213ENST00000620219 CLN6Q9NWW5 311 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 SLC22A7Q9Y694 548 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 SERTM1A2A2V5 107 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 CBLP22681 906 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 PDE7AQ13946 482 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 CLDN24A6NM45 220 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 POLR1CO15160 346 aaPredicted RBP14.72□□□□□ -0.05
CPSF1-213ENST00000620219 PDX1P52945 283 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 DECR1Q16698 335 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 CDRT4Q8N9R6 151 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 MENTQ9BUN1 341 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 NRSN2Q9GZP1 204 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 LHX9Q9NQ69 397 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 R4GN57 208 aa14.72□□□□□ -0.05
CPSF1-213ENST00000620219 IGHV3-20A0A0C4DH32 117 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 CPNE6O95741 557 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 MYBPC3Q14896 1274 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 DUSP5Q16690 384 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 OR52L1Q8NGH7 329 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 SCARF2Q96GP6 870 aaPredicted RBP14.71□□□□□ -0.05
CPSF1-213ENST00000620219 H0YJX3 145 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 UPK1AO00322 258 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 FOXD2O60548 495 aaPredicted RBP14.71□□□□□ -0.05
CPSF1-213ENST00000620219 DAPP51397 102 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 HNRNPFP52597 415 aaKnown RBP14.71□□□□□ -0.05
CPSF1-213ENST00000620219 SIGLEC14Q08ET2 396 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 SHQ1Q6PI26 577 aaKnown RBP14.71□□□□□ -0.05
CPSF1-213ENST00000620219 XKR5Q6UX68 686 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 B3GNT6Q6ZMB0 384 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 SLC29A4Q7RTT9 530 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 NODALQ96S42 347 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 TBL1XR1Q9BZK7 514 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 GPATCH2Q9NW75 528 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 ALPK2Q86TB3 2170 aa14.71□□□□□ -0.05
CPSF1-213ENST00000620219 A0A0G2JPF8 293 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 HNRNPCL2B2RXH8 293 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 HNRNPCL3B7ZW38 293 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 M0R3G1 203 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 TNFRSF21O75509 655 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 HNRNPCL4P0DMR1 293 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 DUSP3P51452 185 aaPredicted RBP14.71□□□□□ -0.06
CPSF1-213ENST00000620219 NPRL3Q12980 569 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 EIPR1Q53HC9 387 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 SAXO2Q658L1 398 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 TCEAL6Q6IPX3 200 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 CA13Q8N1Q1 262 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 PAPD5Q8NDF8 572 aaKnown RBP14.71□□□□□ -0.06
CPSF1-213ENST00000620219 TCEAL3Q969E4 200 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 NDUFAF4Q9P032 175 aa14.71□□□□□ -0.06
CPSF1-213ENST00000620219 IGHV1OR21-1A0A087WYE8 117 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 TSFMP43897 325 aaKnown RBP14.7□□□□□ -0.06
CPSF1-213ENST00000620219 ST3GAL3Q11203 375 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 C6orf141Q5SZD1 244 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 DCST2Q5T1A1 773 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 TYW3Q6IPR3 259 aaKnown RBP14.7□□□□□ -0.06
CPSF1-213ENST00000620219 SIMC1Q8NDZ2 872 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 MIPOL1Q8TD10 442 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 UCK2Q9BZX2 261 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 POFUT2Q9Y2G5 429 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 LOC100506127A0A0U1RQW1 187 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 ZXDAP98168 799 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 DUSP2Q05923 314 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 MED22Q15528 200 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-213ENST00000620219 OR4K5Q8NGD3 323 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 OR9Q1Q8NGQ5 310 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 MTHFD2LQ9H903 347 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-213ENST00000620219 TBC1D23Q9NUY8 699 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 NUP210Q8TEM1 1887 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-213ENST00000620219 APOL3O95236 402 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 CER1O95813 267 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 CSTAP01040 98 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 JMJD7P0C870 316 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 GPR4P46093 362 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 NR0B1P51843 470 aaKnown RBP14.7□□□□□ -0.06
CPSF1-213ENST00000620219 ACY1Q03154 408 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 MFSD12Q6NUT3 480 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 HSDL2Q6YN16 418 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 HEMK1Q9Y5R4 338 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-213ENST00000620219 MDC1Q14676 2089 aaKnown RBP14.7□□□□□ -0.06
CPSF1-213ENST00000620219 CUL9Q8IWT3 2517 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 SCO2O43819 266 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 SCRG1O75711 98 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 FOXL2P58012 376 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 CAMKMTQ7Z624 323 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 NAT6Q93015 286 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 TSLPQ969D9 159 aa14.7□□□□□ -0.06
CPSF1-213ENST00000620219 ZNF354BQ96LW1 612 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms