RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 NTRK1P04629 796 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 ARAFP10398 606 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 AVPR1BP47901 424 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 TMED1Q13445 227 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 SCARB2Q14108 478 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 DGUOKQ16854 277 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 MPEG1Q2M385 716 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.96□□□□□ -0.65
VRK3-223ENST00000601341 PHF19Q5T6S3 580 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 C18orf63Q68DL7 685 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 ZNF554Q86TJ5 538 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 RCBTB1Q8NDN9 531 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 OR4C15Q8NGM1 316 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 OR10Q1Q8NGQ4 319 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 OR1L3Q8NH93 324 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 MYDGFQ969H8 173 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 CIDECQ96AQ7 238 aaPredicted RBP10.96□□□□□ -0.65
VRK3-223ENST00000601341 EXOSC8Q96B26 276 aaKnown RBP10.96□□□□□ -0.65
VRK3-223ENST00000601341 ZNF501Q96CX3 271 aaPredicted RBP10.96□□□□□ -0.65
VRK3-223ENST00000601341 MVB12AQ96EY5 273 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 ZBED6CLQ96FA7 236 aaPredicted RBP10.96□□□□□ -0.65
VRK3-223ENST00000601341 TPD52L3Q96J77 140 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 NDC1Q9BTX1 674 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 SLC35C2Q9NQQ7 365 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 CUTCQ9NTM9 273 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 GIMAP4Q9NUV9 329 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 FAM86C1Q9NVL1 165 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 FKBP14Q9NWM8 211 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 C5AR2Q9P296 337 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 ERVK-18Q9QC07 812 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 CES1P1Q9UKY3 287 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 CLCA2Q9UQC9 943 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 ANGPT4Q9Y264 503 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 PCDHGA6Q9Y5G7 932 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 A3GALT2U3KPV4 340 aa10.96□□□□□ -0.65
VRK3-223ENST00000601341 TMX2-CTNND1H3BSU7 103 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 DLL1O00548 723 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 PGRMC2O15173 223 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 FOXS1O43638 330 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 MPZL2O60487 215 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 FAM20BO75063 409 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 RDH16O75452 317 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 WBP4O75554 376 aaKnown RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 SULT1C4O75897 302 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 C6orf47O95873 294 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 UQCRC2P22695 453 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 RRM2P31350 389 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 FMO3P31513 532 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 CRATP43155 626 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 MANFP55145 182 aaKnown RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 PCBP4P57723 403 aaKnown RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 OLR1P78380 273 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 CDK6Q00534 326 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 AQP6Q13520 282 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 SPCS2Q15005 226 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 MICAQ29983 383 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 PRSS53Q2L4Q9 553 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 RGS21Q2M5E4 152 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 YOD1Q5VVQ6 348 aaPredicted RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 DCDC5Q6ZRR9 648 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 TSEN54Q7Z6J9 526 aaKnown RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 P3H2Q8IVL5 708 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 ENTHD1Q8IYW4 607 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 SAMD14Q8IZD0 417 aaPredicted RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 CA13Q8N1Q1 262 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 OR5T3Q8NGG3 340 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 RHOXF1Q8NHV9 184 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 OR5P2Q8WZ92 322 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 SH3YL1Q96HL8 342 aaPredicted RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 DACH2Q96NX9 599 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 NEUROD4Q9HD90 331 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 PARD6AQ9NPB6 346 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 ACSS1Q9NUB1 689 aaPredicted RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 HCN4Q9Y3Q4 1203 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 COL5A1P20908 1838 aaPredicted RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 H0YIG0 161 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 M0R3G1 203 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 CHST10O43529 356 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 DNAJB6O75190 326 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 PRKRAO75569 313 aaKnown RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 ERAL1O75616 437 aaKnown RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 MED26O95402 600 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 NUDT7P0C024 238 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 RHCEP18577 417 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 NTSP30990 170 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 CSTF2P33240 577 aaKnown RBP eCLIP10.95□□□□□ -0.66
VRK3-223ENST00000601341 KRT20P35900 424 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 UGT2B10P36537 528 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 FRKP42685 505 aaPredicted RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 LIMS1P48059 325 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 PRIM2P49643 509 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 RAB38P57729 211 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 ZFP36L1Q07352 338 aaKnown RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 ILKQ13418 452 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 MLC1Q15049 377 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 TTLL10Q6ZVT0 673 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 CCDC71Q8IV32 467 aaPredicted RBP10.95□□□□□ -0.66
VRK3-223ENST00000601341 SLC15A4Q8N697 577 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 SPPL2AQ8TCT8 520 aa10.95□□□□□ -0.66
VRK3-223ENST00000601341 ADAMTS18Q8TE60 1221 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms